Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 1.1e-40 169.5 81 100.0
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 3.2e-08 61.6 39 76.9
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 3.2e-08 61.6 36 77.8
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 3.2e-08 61.6 36 77.8
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 4.1e-08 61.2 46 67.4
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 4.1e-08 61.2 46 67.4
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.2e-08 60.1 39 74.4
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 9.2e-08 60.1 46 65.2
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 9.2e-08 60.1 39 74.4
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 9.2e-08 60.1 39 74.4
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 9.2e-08 60.1 46 65.2
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 9.2e-08 60.1 39 74.4
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.2e-07 59.7 39 71.8
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 1.2e-07 59.7 39 74.4
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.2e-07 59.7 63 44.4
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.6e-07 59.3 43 60.5
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 1.6e-07 59.3 36 75.0
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.6e-07 59.3 39 74.4
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 2.1e-07 58.9 46 65.2
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 2.1e-07 58.9 39 71.8
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 2.1e-07 58.9 39 71.8
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 2.1e-07 58.9 39 71.8
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 2.1e-07 58.9 39 71.8
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 2.7e-07 58.5 44 65.9
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 2.7e-07 58.5 63 47.6
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.7e-07 58.5 39 69.2
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.7e-07 58.5 39 69.2
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.7e-07 58.5 39 69.2
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 3.5e-07 58.2 39 71.8
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 3.5e-07 58.2 39 71.8
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 3.5e-07 58.2 39 71.8
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 3.5e-07 58.2 39 69.2
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 3.5e-07 58.2 36 72.2
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 3.5e-07 58.2 44 65.9
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.6e-07 57.8 39 69.2
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 4.6e-07 57.8 39 71.8
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 4.6e-07 57.8 63 46.0
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 6.0e-07 57.4 36 69.4
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 6.0e-07 57.4 44 65.9
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 7.8e-07 57.0 39 69.2
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 7.8e-07 57.0 39 66.7
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 7.8e-07 57.0 46 60.9
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 7.8e-07 57.0 36 69.4
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 7.8e-07 57.0 36 69.4
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 7.8e-07 57.0 41 61.0
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 69.2
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 69.2
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 69.2
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 66.7
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 69.2
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 66.7
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 66.7
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.0e-06 56.6 39 66.7
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 1.0e-06 56.6 36 69.4
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 1.3e-06 56.2 36 69.4
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.3e-06 56.2 39 69.2
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.3e-06 56.2 36 66.7
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.3e-06 56.2 39 69.2
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.3e-06 56.2 39 69.2
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.3e-06 56.2 39 69.2
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 1.7e-06 55.8 36 66.7
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.7e-06 55.8 39 66.7
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.7e-06 55.8 39 66.7
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.7e-06 55.8 39 66.7
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 2.3e-06 55.5 39 69.2
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 2.3e-06 55.5 39 66.7
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 3.0e-06 55.1 39 64.1
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 3.0e-06 55.1 36 66.7
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 3.0e-06 55.1 39 64.1
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 3.0e-06 55.1 39 64.1
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.0e-06 55.1 39 64.1
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 3.0e-06 55.1 39 66.7
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 3.9e-06 54.7 39 64.1
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 3.9e-06 54.7 58 50.0
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 3.9e-06 54.7 39 64.1
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 3.9e-06 54.7 39 64.1
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 5.1e-06 54.3 39 66.7
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 6.6e-06 53.9 39 64.1
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 6.6e-06 53.9 39 64.1
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 8.6e-06 53.5 36 63.9
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 8.6e-06 53.5 36 63.9
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 8.6e-06 53.5 36 66.7


User provided reference genes

Program Settings