Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.5e-164 582.8 294 100.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.5e-119 432.6 300 74.3
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.2e-115 419.5 299 70.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 9.2e-98 360.9 294 64.6
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.6e-97 358.6 299 62.5
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.3e-96 356.3 294 62.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.4e-92 342.0 278 60.4
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.1e-90 335.5 290 58.3
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.0e-89 333.2 253 63.2
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.5e-87 326.2 260 60.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.6e-86 323.6 292 56.8
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 3.6e-86 322.4 295 56.9
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 6.2e-86 321.6 304 55.3
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 8.1e-86 321.2 281 55.9
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.1e-85 320.9 293 56.3
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.3e-85 319.7 294 56.1
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 5.2e-85 318.5 251 60.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 6.8e-85 318.2 253 60.9
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.0e-84 316.6 292 53.4
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 2.0e-84 316.6 294 54.1
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.8e-84 314.3 266 57.5
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.3e-83 313.9 251 60.2
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.7e-83 313.5 259 58.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.7e-83 312.4 294 54.8
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.1e-82 310.8 291 55.3
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.4e-82 310.5 252 62.7
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.4e-82 309.7 292 54.5
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 5.4e-82 308.5 278 56.1
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 7.1e-82 308.1 290 54.5
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-81 307.4 280 55.4
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.6e-81 307.0 293 56.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 3.5e-81 305.8 260 57.7
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.0e-81 305.1 280 55.0
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.0e-80 304.3 251 57.8
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.3e-80 303.9 282 55.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.7e-80 303.5 254 58.3
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.3e-80 303.1 292 52.7
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.9e-80 302.4 294 52.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.6e-80 301.2 295 52.5
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 3.3e-79 299.3 298 51.3
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.3e-79 299.3 295 52.2
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 4.3e-79 298.9 292 53.1
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 5.6e-79 298.5 294 50.7
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 5.6e-79 298.5 282 55.3
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 7.3e-79 298.1 253 57.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 9.5e-79 297.7 254 53.9
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 4.7e-78 295.4 282 52.8
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.1e-77 294.3 257 54.9
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.1e-77 294.3 274 54.4
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.1e-77 294.3 282 52.5
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-77 293.5 295 52.2
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.8e-77 293.5 322 49.4
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.3e-77 293.1 288 53.5
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.1e-77 292.7 308 51.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.0e-77 292.4 288 51.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.0e-77 292.4 294 52.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 5.2e-77 292.0 288 53.1
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.2e-77 292.0 293 51.9
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.2e-76 290.8 253 56.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.8e-76 288.5 253 54.9
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.3e-75 287.3 299 50.5
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.9e-75 286.2 338 46.4
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.9e-75 286.2 411 41.1
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 8.4e-75 284.6 293 51.5
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.9e-74 283.5 295 50.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.9e-74 283.5 238 57.1
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 5.4e-74 282.0 341 46.6
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 6.0e-73 278.5 281 52.3
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.0e-72 277.7 276 50.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 2.3e-72 276.6 294 47.3
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 3.9e-72 275.8 266 53.4
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.5e-71 273.1 295 48.5
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.3e-71 272.7 260 53.1
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 4.3e-71 272.3 294 45.9
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 4.3e-71 272.3 294 44.2
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 9.6e-71 271.2 345 43.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.2e-70 270.8 238 55.9
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 4.7e-70 268.9 289 47.8
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.7e-70 268.9 244 51.2
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.2e-70 268.5 290 46.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.1e-69 267.7 296 45.9
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.4e-69 266.5 294 44.9
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 2.4e-69 266.5 270 45.6
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 3.1e-69 266.2 293 45.4
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.1e-69 266.2 305 44.9
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 6.9e-69 265.0 289 44.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.4e-68 262.3 313 43.5
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 5.8e-68 261.9 260 52.3
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 9.9e-68 261.2 293 44.4
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.9e-67 259.6 270 44.1
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.9e-67 259.6 270 44.1
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 4.9e-67 258.8 289 44.3
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 8.4e-67 258.1 269 47.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-65 253.8 255 51.8
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.0e-64 251.1 289 47.4
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 9.6e-63 244.6 181 63.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.6e-62 242.7 251 46.2
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 4.8e-62 242.3 293 42.3
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.8e-62 242.3 256 46.9
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 6.2e-62 241.9 251 46.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.0e-61 239.2 256 46.5
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.0e-61 239.2 256 46.5
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 9.0e-61 238.0 256 46.5
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.6e-60 236.5 297 43.4
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.7e-59 233.8 293 44.7
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.9e-59 233.0 290 42.8
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 3.8e-59 232.6 292 40.8
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.2e-58 229.6 297 43.4
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.0e-56 224.6 174 63.8
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-55 221.1 224 49.6
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 7.4e-55 218.4 294 39.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.8e-54 215.7 174 62.1
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-53 214.5 255 42.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.4e-52 209.5 218 51.8
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-50 204.5 237 47.3
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-50 204.5 209 51.2
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.4e-50 203.4 287 42.5
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.8e-44 182.2 153 59.5
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.8e-44 182.2 206 48.5
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.2e-43 180.3 140 62.9
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.6e-41 172.6 228 43.0
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 4.6e-41 172.6 255 36.9
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.3e-40 170.2 183 47.5
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.3e-38 164.5 181 50.3
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 4.8e-38 162.5 199 47.7
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.3e-37 159.1 182 44.5
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.0e-37 158.3 124 59.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.2e-36 157.9 220 42.3
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.6e-36 156.8 328 31.7
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.3e-35 154.5 127 58.3
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.5e-34 150.2 103 65.0
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.1e-32 142.5 460 27.4
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 9.7e-31 138.3 193 44.0
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.8e-30 136.0 183 45.9
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 5.3e-29 132.5 249 31.7
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 6.9e-29 132.1 269 31.2
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.1e-26 124.8 246 30.5
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.2e-26 122.9 274 34.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.8e-24 117.5 167 37.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.2e-22 110.5 86 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.2e-22 110.5 261 26.4
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.9e-18 97.4 116 47.4
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 3.6e-17 93.2 119 46.2
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.1e-17 92.4 64 67.2
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 1.4e-16 91.3 141 36.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.3e-15 86.7 61 68.9
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.3e-15 86.7 66 62.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.3e-14 84.7 85 45.9
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 2.8e-14 83.6 197 29.9
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 8.2e-14 82.0 141 33.3
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 8.2e-14 82.0 141 33.3
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.6e-12 77.8 61 57.4
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 3.5e-12 76.6 132 33.3
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.0e-11 75.1 128 35.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 7.2e-10 68.9 147 27.2
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.6e-07 60.5 68 42.6
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 9.7e-07 58.5 115 38.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 2.2e-06 57.4 38 63.2


User provided reference genes

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