Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0168181 Helianthus annuus HOM05D000602 ORTHO05D221457 6.1e-67 257.3 126 100.0
ECA240G3358 Erigeron canadensis HOM05D000602 ORTHO05D002573 2.4e-18 95.9 48 93.8
Peaxi162Scf00397g00526 Petunia axillaris HOM05D000602 ORTHO05D002573 2.0e-17 92.8 45 97.8
Solyc01g094200.4 Solanum lycopersicum HOM05D000602 ORTHO05D002573 2.0e-17 92.8 45 97.8
Sopen01g038000 Solanum pennellii HOM05D000602 ORTHO05D002573 2.0e-17 92.8 45 97.8
PGSC0003DMG401000020 Solanum tuberosum HOM05D000602 ORTHO05D002573 2.0e-17 92.8 45 97.8
HanXRQChr03g0093501 Helianthus annuus HOM05D000602 ORTHO05D002573 2.6e-17 92.4 48 89.6
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 3.4e-17 92.0 47 95.7
MBI18_g09780_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 3.4e-17 92.0 45 93.3
arahy.Tifrunner.gnm1.ann1.94RAPG Arachis hypogaea HOM05D000602 ORTHO05D002573 7.6e-17 90.9 97 52.6
Lsat_1_v5_gn_3_136701 Lactuca sativa HOM05D000602 ORTHO05D002573 9.9e-17 90.5 45 91.1
Lsat_1_v5_gn_7_5301 Lactuca sativa HOM05D000602 ORTHO05D002573 9.9e-17 90.5 45 93.3
CSS0036160 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.7e-16 89.7 47 87.2
CSS0038767 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.7e-16 89.7 47 87.2
CARHR248740 Cardamine hirsuta HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
Cpa.g.sc18.186 Carica papaya HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
Glyma.03G014600 Glycine max HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
Glyma.07G074700 Glycine max HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
Phvul.010G094700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
Potri.002G156000 Populus trichocarpa HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
Potri.014G079900 Populus trichocarpa HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
VMungo0331G0435 Vigna mungo HOM05D000602 ORTHO05D002573 2.2e-16 89.4 45 91.1
Migut.B01710 Erythranthe guttata HOM05D000602 ORTHO05D002573 2.9e-16 89.0 45 91.1
Thhalv10028520m.g Eutrema salsugineum HOM05D000602 ORTHO05D002573 2.9e-16 89.0 45 91.1
Sp6g00610 Schrenkiella parvula HOM05D000602 ORTHO05D002573 2.9e-16 89.0 45 91.1
TWI59G0725 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 2.9e-16 89.0 45 91.1
Sed0013968 Sechium edule HOM05D000602 ORTHO05D002573 4.9e-16 88.2 45 88.9
SGA_v2.0_scaffold277G46677 Striga asiatica HOM05D000602 ORTHO05D002573 6.4e-16 87.8 45 88.9
THA.LOC104817017 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 6.4e-16 87.8 45 91.1
arahy.Tifrunner.gnm1.ann1.4G7KVK Arachis hypogaea HOM05D000602 ORTHO05D002573 8.4e-16 87.4 45 88.9
arahy.Tifrunner.gnm1.ann1.NM7RU6 Arachis hypogaea HOM05D000602 ORTHO05D002573 8.4e-16 87.4 45 88.9
Os10g0503500 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 8.4e-16 87.4 45 88.9
Psat4g152880 Pisum sativum HOM05D000602 ORTHO05D002573 8.4e-16 87.4 45 88.9
Sabra02G0123900 Salix brachista HOM05D000602 ORTHO05D002573 8.4e-16 87.4 45 88.9
BcaC01g06869 Brassica carinata HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
BcaNung05356 Brassica carinata HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
A03p32130 Brassica napus HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
C03p39160 Brassica napus HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
BolC3t16186H Brassica oleracea HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
Ciclev10019380m.g Citrus clementina HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 91.1
COL.COLO4_12663 Corchorus olitorius HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 86.7
DCAR_015950 Daucus carota HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
Gohir.D07G149300 Gossypium hirsutum HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
Gorai.001G170700 Gossypium raimondii HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
Thecc.01G365100 Theobroma cacao HOM05D000602 ORTHO05D002573 1.1e-15 87.0 44 90.9
TPR.G9812 Trifolium pratense HOM05D000602 ORTHO05D002573 1.1e-15 87.0 45 88.9
arahy.Tifrunner.gnm1.ann1.I325BF Arachis hypogaea HOM05D000602 ORTHO05D002573 1.4e-15 86.7 45 88.9
HanXRQChr04g0121671 Helianthus annuus HOM05D000602 ORTHO05D002573 1.4e-15 86.7 45 88.9
Nn1g01428 Nelumbo nucifera HOM05D000602 ORTHO05D002573 1.4e-15 86.7 43 93.0
unitig_0.g1279 Utricularia gibba HOM05D000602 ORTHO05D002573 1.4e-15 86.7 45 88.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.9e-15 86.3 45 88.9
Actinidia38308 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.9e-15 86.3 45 88.9
BcaB01g02259 Brassica carinata HOM05D000602 ORTHO05D002573 1.9e-15 86.3 45 88.9
BcaC04g24160 Brassica carinata HOM05D000602 ORTHO05D002573 1.9e-15 86.3 45 88.9
A09p00420 Brassica napus HOM05D002079 ORTHO05D002573 1.9e-15 86.3 45 88.9
C09p00470 Brassica napus HOM05D002079 ORTHO05D002573 1.9e-15 86.3 45 88.9
BolC9t52982H Brassica oleracea HOM05D000602 ORTHO05D002573 1.9e-15 86.3 45 88.9
BraA09t35719Z Brassica rapa HOM05D000602 ORTHO05D002573 1.9e-15 86.3 45 88.9
Haze_15462 Corylus avellana HOM05D000602 ORTHO05D002573 1.9e-15 86.3 45 88.9
Aa31LG5G420 Aethionema arabicum HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 91.1
MSTRG.20809 Avicennia marina HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 86.7
BraA03t12383Z Brassica rapa HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 86.7
CANSAT56G0553 Cannabis sativa HOM05D000602 ORTHO05D002573 2.4e-15 85.9 47 85.1
Cc02_g37470 Coffea canephora HOM05D000602 ORTHO05D002573 2.4e-15 85.9 47 85.1
Duzib133G0534 Durio zibethinus HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 88.9
Gohir.A07G143500 Gossypium hirsutum HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 86.7
Lj7A517G44 Lonicera japonica HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 88.9
MD01G1052400 Malus domestica HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 88.9
MD07G1129000 Malus domestica HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 88.9
Prupe.2G160000 Prunus persica HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 88.9
Sed0021943 Sechium edule HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 86.7
Zm00001eb220780 Zea mays HOM05D000602 ORTHO05D002573 2.4e-15 85.9 45 86.7
ATR0680G410 Amborella trichopoda HOM05D000602 ORTHO05D002573 3.2e-15 85.5 47 85.1
Ca_07885_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 3.2e-15 85.5 45 82.2
Glyma.18G229300 Glycine max HOM05D000602 ORTHO05D002573 3.2e-15 85.5 45 86.7
Lj9C579T5 Lonicera japonica HOM05D000602 ORTHO05D002573 3.2e-15 85.5 45 86.7
Phvul.008G068700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 3.2e-15 85.5 45 86.7
QL08p049812 Quercus lobata HOM05D000602 ORTHO05D002573 3.2e-15 85.5 45 88.9
ClCG06G000010 Citrullus lanatus HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 86.7
CsaV3_6G005750 Cucumis sativus L. HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 86.7
Dinv32443 Davidia involucrata HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 86.7
FvH4_7g13590 Fragaria vesca HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 88.9
FAN06G1738 Fragaria x ananassa HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 88.9
FAN06G1931 Fragaria x ananassa HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 88.9
Lj3g0018490 Lotus japonicus HOM05D000602 ORTHO05D002573 4.2e-15 85.1 44 88.6
Medtr8g032040 Medicago truncatula HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 86.7
Oeu014685.1 Olea europaea HOM05D000602 ORTHO05D002573 4.2e-15 85.1 52 80.8
THA.LOC104801455 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 88.9
VMungo1383G3458 Vigna mungo HOM05D000602 ORTHO05D002573 4.2e-15 85.1 45 86.7
Aqoxy7G00370 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 5.4e-15 84.7 45 84.4
EL10Ac1g00523 Beta vulgaris HOM05D000602 ORTHO05D002573 5.4e-15 84.7 45 84.4
Glyma.09G262900 Glycine max HOM05D000602 ORTHO05D002573 5.4e-15 84.7 45 86.7
PGR031G1425 Punica granatum HOM05D000602 ORTHO05D002573 5.4e-15 84.7 45 86.7
RcHm_v2.0_Chr1g0353381 Rosa chinensis HOM05D000602 ORTHO05D002573 5.4e-15 84.7 45 88.9
TWI23G1023 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 5.4e-15 84.7 45 86.7
Atru.chr5.443 Acer truncatum HOM05D000602 ORTHO05D002573 7.1e-15 84.3 45 88.9
Carub.0006s3665 Capsella rubella HOM05D000602 ORTHO05D002573 7.1e-15 84.3 45 86.7
HPP92_002421 Vanilla planifolia HOM05D000602 ORTHO05D002573 7.1e-15 84.3 44 86.4
Cfa003960 Carpinus fangiana HOM05D000602 ORTHO05D002573 9.3e-15 84.0 45 88.9
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 9.3e-15 84.0 44 88.6
Duzib138G1809 Durio zibethinus HOM05D000602 ORTHO05D002573 9.3e-15 84.0 45 86.7
FAN10G2205 Fragaria x ananassa HOM05D000602 ORTHO05D002573 9.3e-15 84.0 45 86.7
FAN10G4318 Fragaria x ananassa HOM05D000602 ORTHO05D002573 9.3e-15 84.0 45 86.7
Medtr7g076650 Medicago truncatula HOM05D000602 ORTHO05D002573 9.3e-15 84.0 45 82.2
Psat3g111680 Pisum sativum HOM05D000602 ORTHO05D002573 9.3e-15 84.0 45 82.2
CiPaw.01G056400 Carya illinoinensis HOM05D000602 ORTHO05D002573 1.2e-14 83.6 45 86.7
ECA236G4524 Erigeron canadensis HOM05D000602 ORTHO05D002573 1.2e-14 83.6 45 84.4
Eucgr.D02251 Eucalyptus grandis HOM05D000602 ORTHO05D002573 1.2e-14 83.6 60 70.0
Lalb_Chr17g0339901 Lupinus albus HOM05D000602 ORTHO05D002573 1.2e-14 83.6 44 84.1
Manes.05G037900 Manihot esculenta HOM05D000602 ORTHO05D002573 1.2e-14 83.6 45 86.7
PSO478G4088 Papaver somniferum HOM05D000602 ORTHO05D002573 1.2e-14 83.6 44 84.1
PSO782G2006 Papaver somniferum HOM05D000602 ORTHO05D002573 1.2e-14 83.6 44 84.1
Rhsim07G0018800 Rhododendron simsii HOM05D000602 ORTHO05D002573 1.2e-14 83.6 45 86.7
TPR.G22745 Trifolium pratense HOM05D000602 ORTHO05D002573 1.6e-14 83.2 45 82.2
Duzib268G0618 Durio zibethinus HOM05D000602 ORTHO05D002573 2.1e-14 82.8 44 86.4
Sc23g0003100 Simmondsia chinensis HOM05D000602 ORTHO05D002573 2.1e-14 82.8 45 82.2
AUR62023443 Chenopodium quinoa HOM05D000602 ORTHO05D002573 2.7e-14 82.4 45 82.2
AUR62033330 Chenopodium quinoa HOM05D000602 ORTHO05D002573 2.7e-14 82.4 45 82.2
GSVIVG01026824001 Vitis vinifera HOM05D000602 ORTHO05D002573 2.7e-14 82.4 45 86.7
AL6G52860 Arabidopsis lyrata HOM05D000602 ORTHO05D002573 3.5e-14 82.0 45 82.2
CDE04G1559 Ceratophyllum demersum HOM05D000602 ORTHO05D002573 3.5e-14 82.0 45 84.4
HanXRQChr06g0169901 Helianthus annuus HOM05D000602 ORTHO05D002573 3.5e-14 82.0 45 84.4
Lalb_Chr10g0097281 Lupinus albus HOM05D000602 ORTHO05D002573 3.5e-14 82.0 44 84.1
Hund27307 Selenicereus undatus HOM05D000602 ORTHO05D002573 3.5e-14 82.0 45 82.2
TAR374G0975 Trochodendron aralioides HOM05D000602 ORTHO05D002573 3.5e-14 82.0 45 86.7
AUR62004314 Chenopodium quinoa HOM05D000602 ORTHO05D002573 4.6e-14 81.6 45 82.2
CAN.G78.18 Capsicum annuum HOM05D000602 ORTHO05D002573 1.0e-13 80.5 40 95.0
Gohir.D11G091100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 1.3e-13 80.1 43 86.0
Hund16946 Selenicereus undatus HOM05D000602 ORTHO05D002573 1.7e-13 79.7 46 76.1
SEGI_19453 Sequoiadendron giganteum HOM05D000602 ORTHO05D002573 1.7e-13 79.7 43 83.7
Aqoxy5G03954 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 5.1e-13 78.2 43 81.4
Gohir.A11G082400 Gossypium hirsutum HOM05D000602 ORTHO05D002573 5.1e-13 78.2 43 86.0
Gorai.007G097100 Gossypium raimondii HOM05D000602 ORTHO05D002573 5.1e-13 78.2 43 83.7
AT4G00570 Arabidopsis thaliana HOM05D000602 ORTHO05D002573 1.1e-12 77.0 45 77.8
Ah.05g176410 Amaranthus hybridus HOM05D000602 ORTHO05D002573 1.9e-12 76.3 45 80.0
Sabra14G0058100 Salix brachista HOM05D000602 ORTHO05D002573 9.6e-12 73.9 58 65.5
arahy.Tifrunner.gnm1.ann1.Q65WP5 Arachis hypogaea HOM05D000602 ORTHO05D002573 1.6e-11 73.2 45 77.8
arahy.Tifrunner.gnm1.ann1.THTJ31 Arachis hypogaea HOM05D000602 ORTHO05D002573 1.6e-11 73.2 45 77.8
Nitab4.5_0006669g0030 Nicotiana tabacum HOM05D000602 ORTHO05D002573 2.1e-11 72.8 34 97.1
Ca_23728_v3 Cicer arietinum L. HOM05D000602 ORTHO05D000002 8.1e-11 70.9 47 74.5
Mapoly0080s0072 Marchantia polymorpha HOM05D000602 ORTHO05D002573 3.1e-10 68.9 42 73.8
Pp3c11_26700 Physcomitrium patens HOM05D000602 ORTHO05D002573 3.1e-10 68.9 43 67.4
HanXRQChr16g0528251 Helianthus annuus HOM05D000234 ORTHO05D000335 9.0e-10 67.4 41 85.4
vmacro13318 Vaccinium macrocarpon HOM05D000602 ORTHO05D002573 1.5e-09 66.6 35 85.7
SMO169G0156 Selaginella moellendorffii HOM05D000602 ORTHO05D002573 1.7e-08 63.2 72 51.4
HanXRQChr16g0528211 Helianthus annuus HOM05D000234 ORTHO05D000335 6.4e-08 61.2 41 75.6
Os07g0496200 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 4.2e-07 58.5 39 69.2
EL10Ac1g00707 Beta vulgaris HOM05D000602 ORTHO05D002573 7.1e-07 57.8 43 65.1
CBR_g17566 Chara braunii HOM05D000602 ORTHO05D002573 9.3e-07 57.4 59 59.3
CSS0004991 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.2e-06 57.0 41 65.9
CSS0036508 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.2e-06 57.0 41 65.9
Ah.05g177590 Amaranthus hybridus HOM05D000602 ORTHO05D002573 1.6e-06 56.6 43 62.8
DCAR_015776 Daucus carota HOM05D000602 ORTHO05D002573 1.6e-06 56.6 41 68.3
Zm00001eb321980 Zea mays HOM05D000602 ORTHO05D002573 1.6e-06 56.6 39 66.7
Actinidia05792 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.1e-06 56.2 41 68.3
Eucgr.E01713 Eucalyptus grandis HOM05D000602 ORTHO05D002573 2.1e-06 56.2 39 69.2
MD02G1226700 Malus domestica HOM05D000602 ORTHO05D002573 2.1e-06 56.2 79 45.6
AUR62013799 Chenopodium quinoa HOM05D000602 ORTHO05D002573 2.7e-06 55.8 43 62.8
AUR62023359 Chenopodium quinoa HOM05D000602 ORTHO05D002573 2.7e-06 55.8 43 62.8
PGR042G2983 Punica granatum HOM05D000602 ORTHO05D002573 2.7e-06 55.8 39 69.2
CBR_g3306 Chara braunii HOM05D000602 ORTHO05D002573 3.5e-06 55.5 59 52.5
CDE11G0959 Ceratophyllum demersum HOM05D000602 ORTHO05D002573 4.6e-06 55.1 46 60.9
Hma1.2p1_0021F.1_g014300 Hydrangea macrophylla HOM05D000602 ORTHO05D002573 4.6e-06 55.1 45 62.2
HanXRQChr01g0017481 Helianthus annuus HOM05D000602 ORTHO05D002573 6.0e-06 54.7 41 65.9
Lsat_1_v5_gn_0_4981 Lactuca sativa HOM05D000602 ORTHO05D002573 6.0e-06 54.7 41 65.9
Lj7C552G9 Lonicera japonica HOM05D000602 ORTHO05D002573 6.0e-06 54.7 39 64.1
Sed0025140 Sechium edule HOM05D000602 ORTHO05D002573 6.0e-06 54.7 39 66.7
Cfa022159 Carpinus fangiana HOM05D000602 ORTHO05D002573 7.9e-06 54.3 39 66.7
Ca_23144_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 7.9e-06 54.3 49 53.1
ClCG05G002840 Citrullus lanatus HOM05D000602 ORTHO05D002573 7.9e-06 54.3 39 66.7
MELO3C006261.2 Cucumis melo HOM05D000602 ORTHO05D002573 7.9e-06 54.3 39 66.7
Gohir.A05G334100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 7.9e-06 54.3 39 66.7
Gohir.D04G072100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 7.9e-06 54.3 39 66.7
Gorai.012G081300 Gossypium raimondii HOM05D000602 ORTHO05D002573 7.9e-06 54.3 39 66.7
RcHm_v2.0_Chr1g0343641 Rosa chinensis HOM05D000602 ORTHO05D002573 7.9e-06 54.3 40 60.0
TWI23G0661 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 7.9e-06 54.3 39 66.7


User provided reference genes

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