Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0166351 Helianthus annuus HOM05D002311 ORTHO05D021978 8.4e-38 159.8 80 100.0
HanXRQChr05g0146581 Helianthus annuus HOM05D002311 ORTHO05D021978 4.2e-37 157.5 80 98.8
ECA232G3582 Erigeron canadensis HOM05D002311 ORTHO05D006991 1.5e-26 122.5 72 87.5
HanXRQChr17g0554791 Helianthus annuus HOM05D002311 ORTHO05D006991 5.7e-26 120.6 62 96.8
Lsat_1_v5_gn_8_137561 Lactuca sativa HOM05D002311 ORTHO05D006991 4.1e-24 114.4 61 93.4
FvH4_6g26910 Fragaria vesca HOM05D002311 ORTHO05D006991 9.1e-24 113.2 74 79.7
FAN09G1847 Fragaria x ananassa HOM05D002311 ORTHO05D006991 9.1e-24 113.2 64 89.1
FAN14G0051 Fragaria x ananassa HOM05D002311 ORTHO05D006991 9.1e-24 113.2 64 89.1
RcHm_v2.0_Chr2g0128661 Rosa chinensis HOM05D002311 ORTHO05D006991 9.1e-24 113.2 64 89.1
CSS0011338 Camellia sinensis var. sinensis HOM05D002311 ORTHO05D006991 1.2e-23 112.8 64 85.9
CSS0038286 Camellia sinensis var. sinensis HOM05D002311 ORTHO05D006991 1.2e-23 112.8 64 85.9
Lj8C106T3 Lonicera japonica HOM05D002311 ORTHO05D006991 1.2e-23 112.8 64 89.1
MD09G1241200 Malus domestica HOM05D002311 ORTHO05D006991 2.6e-23 111.7 74 78.4
MD17G1234000 Malus domestica HOM05D002311 ORTHO05D006991 3.4e-23 111.3 74 77.0
CARHR124590 Cardamine hirsuta HOM05D002311 ORTHO05D006991 4.5e-23 110.9 72 77.8
Actinidia10986 Actinidia chinensis HOM05D002311 ORTHO05D006991 5.9e-23 110.5 64 85.9
Cfa014682 Carpinus fangiana HOM05D002311 ORTHO05D006991 5.9e-23 110.5 64 84.4
Ca_18904_v3 Cicer arietinum L. HOM05D002311 ORTHO05D006991 5.9e-23 110.5 74 78.4
Prupe.3G126600 Prunus persica HOM05D002311 ORTHO05D006991 7.7e-23 110.2 74 75.7
QL07p048789 Quercus lobata HOM05D002311 ORTHO05D021978 1.0e-22 109.8 73 75.3
AL4G26180 Arabidopsis lyrata HOM05D002311 ORTHO05D006991 1.3e-22 109.4 72 77.8
Carub.0004s1229 Capsella rubella HOM05D002311 ORTHO05D006991 1.3e-22 109.4 72 77.8
Dinv02423 Davidia involucrata HOM05D002311 ORTHO05D006991 1.3e-22 109.4 74 75.7
Gohir.A05G373200 Gossypium hirsutum HOM05D002311 ORTHO05D006991 1.3e-22 109.4 74 75.7
Gohir.D04G042300 Gossypium hirsutum HOM05D002311 ORTHO05D006991 1.3e-22 109.4 74 75.7
Gorai.012G047800 Gossypium raimondii HOM05D002311 ORTHO05D006991 1.3e-22 109.4 74 75.7
ATR0602G230 Amborella trichopoda HOM05D002311 ORTHO05D006991 1.7e-22 109.0 74 74.3
Thhalv10016352m.g Eutrema salsugineum HOM05D002311 ORTHO05D006991 1.7e-22 109.0 72 76.4
Nn1g06356 Nelumbo nucifera HOM05D002311 ORTHO05D006991 1.7e-22 109.0 74 75.7
TAR626G0705 Trochodendron aralioides HOM05D002311 ORTHO05D006991 1.7e-22 109.0 72 76.4
CiPaw.03G183400 Carya illinoinensis HOM05D002311 ORTHO05D006991 2.2e-22 108.6 62 85.5
MBI06_g34197_MAGBIO Magnolia biondii HOM05D002311 ORTHO05D006991 2.2e-22 108.6 74 73.0
TPR.G29325 Trifolium pratense HOM05D002311 ORTHO05D006991 2.2e-22 108.6 74 77.0
Cc05_g07950 Coffea canephora HOM05D002311 ORTHO05D006991 2.9e-22 108.2 74 75.7
Potri.013G123700 Populus trichocarpa HOM05D002311 ORTHO05D006991 2.9e-22 108.2 74 75.7
Cpa.g.sc50.1 Carica papaya HOM05D002311 ORTHO05D006991 3.8e-22 107.8 74 75.7
COL.COLO4_22762 Corchorus olitorius HOM05D002311 ORTHO05D006991 3.8e-22 107.8 74 75.7
DCAR_013050 Daucus carota HOM05D002311 ORTHO05D006991 3.8e-22 107.8 74 75.7
Thecc.01G240200 Theobroma cacao HOM05D002311 ORTHO05D006991 3.8e-22 107.8 74 75.7
TWI23G1320 Tripterygium wilfordii HOM05D002311 ORTHO05D006991 3.8e-22 107.8 74 74.3
vmacro09236 Vaccinium macrocarpon HOM05D002311 ORTHO05D006991 3.8e-22 107.8 64 85.9
SGA_v2.0_scaffold109G31124 Striga asiatica HOM05D002311 ORTHO05D006991 5.0e-22 107.5 74 73.0
Aqoxy1G02238 Aquilegia oxysepala HOM05D002311 ORTHO05D006991 6.5e-22 107.1 64 84.4
Aqoxy6G01583 Aquilegia oxysepala HOM05D002311 ORTHO05D006991 6.5e-22 107.1 64 84.4
Dinv19988 Davidia involucrata HOM05D002311 ORTHO05D006991 6.5e-22 107.1 74 74.3
Phvul.011G116300 Phaseolus vulgaris HOM05D002311 ORTHO05D006991 6.5e-22 107.1 74 74.3
GSVIVG01020652001 Vitis vinifera HOM05D002311 ORTHO05D006991 6.5e-22 107.1 74 74.3
MSTRG.14318 Avicennia marina HOM05D002311 ORTHO05D006991 8.5e-22 106.7 74 71.6
Ciclev10014506m.g Citrus clementina HOM05D002311 ORTHO05D006991 8.5e-22 106.7 72 73.6
PSO541G5689 Papaver somniferum HOM05D002311 ORTHO05D006991 8.5e-22 106.7 74 75.7
BcaC01g05982 Brassica carinata HOM05D002311 ORTHO05D006991 1.1e-21 106.3 74 73.0
Hma1.2p1_0002F.1_g002430 Hydrangea macrophylla HOM05D002311 ORTHO05D006991 1.1e-21 106.3 64 81.2
SEGI_23407 Sequoiadendron giganteum HOM05D002311 ORTHO05D006991 1.1e-21 106.3 72 75.0
Sp4g13530 Schrenkiella parvula HOM05D002311 ORTHO05D006991 1.4e-21 105.9 72 75.0
TWI59G1076 Tripterygium wilfordii HOM05D002311 ORTHO05D006991 1.4e-21 105.9 74 71.6
Aa31LG5G5860 Aethionema arabicum HOM05D002311 ORTHO05D006991 1.9e-21 105.5 61 86.9
AT2G31060 Arabidopsis thaliana HOM05D002311 ORTHO05D006991 1.9e-21 105.5 72 73.6
Lalb_Chr01g0005901 Lupinus albus HOM05D002311 ORTHO05D006991 1.9e-21 105.5 64 79.7
unitig_62.g23162 Utricularia gibba HOM05D002311 ORTHO05D006991 1.9e-21 105.5 74 73.0
BcaB06g28406 Brassica carinata HOM05D002311 ORTHO05D006991 2.5e-21 105.1 62 83.9
BcaB06g28481 Brassica carinata HOM05D002311 ORTHO05D006991 2.5e-21 105.1 62 83.9
A04p23800 Brassica napus HOM05D002311 ORTHO05D006991 2.5e-21 105.1 62 83.9
C04p60290 Brassica napus HOM05D002311 ORTHO05D006991 2.5e-21 105.1 62 83.9
BolC4t27528H Brassica oleracea HOM05D002311 ORTHO05D006991 2.5e-21 105.1 62 83.9
BraA04t17905Z Brassica rapa HOM05D002311 ORTHO05D006991 2.5e-21 105.1 62 83.9
ClCG00G001850 Citrullus lanatus HOM05D002311 ORTHO05D006991 2.5e-21 105.1 74 73.0
ClCG02G002240 Citrullus lanatus HOM05D002311 ORTHO05D006991 2.5e-21 105.1 74 73.0
Oeu064837.1 Olea europaea HOM05D002311 ORTHO05D006991 2.5e-21 105.1 74 71.6
PSO675G3756 Papaver somniferum HOM05D002311 ORTHO05D006991 2.5e-21 105.1 74 74.3
Rhsim04G0072400 Rhododendron simsii HOM05D002311 ORTHO05D006991 2.5e-21 105.1 64 82.8
Lj3g0013597 Lotus japonicus HOM05D002311 ORTHO05D006991 3.2e-21 104.8 74 73.0
Sc21g0003560 Simmondsia chinensis HOM05D002311 ORTHO05D006991 3.2e-21 104.8 74 71.6
A03p17350 Brassica napus HOM05D002311 ORTHO05D006991 4.2e-21 104.4 72 73.6
BraA03t11007Z Brassica rapa HOM05D002311 ORTHO05D006991 4.2e-21 104.4 72 73.6
Eucgr.A01886 Eucalyptus grandis HOM05D002311 ORTHO05D006991 4.2e-21 104.4 74 73.0
SalBow7G3750 Salvia bowleyana HOM05D002311 ORTHO05D006991 4.2e-21 104.4 74 71.6
SalBow7G4511 Salvia bowleyana HOM05D002311 ORTHO05D006991 4.2e-21 104.4 74 71.6
Sed0021656 Sechium edule HOM05D002311 ORTHO05D006991 4.2e-21 104.4 74 73.0
Atru.chr6.2843 Acer truncatum HOM05D002311 ORTHO05D006991 5.5e-21 104.0 67 76.1
CANSAT64G1412 Cannabis sativa HOM05D002311 ORTHO05D006991 5.5e-21 104.0 72 73.6
MELO3C018848.2 Cucumis melo HOM05D002311 ORTHO05D006991 5.5e-21 104.0 72 72.2
CsaV3_7G003270 Cucumis sativus L. HOM05D002311 ORTHO05D006991 5.5e-21 104.0 74 73.0
Manes.13G140000 Manihot esculenta HOM05D002311 ORTHO05D006991 5.5e-21 104.0 74 70.3
PGR042G1338 Punica granatum HOM05D002311 ORTHO05D006991 5.5e-21 104.0 74 70.3
CAN.G1543.6 Capsicum annuum HOM05D002311 ORTHO05D006991 7.2e-21 103.6 74 70.3
Lalb_Chr19g0135031 Lupinus albus HOM05D002311 ORTHO05D006991 7.2e-21 103.6 74 70.3
Nitab4.5_0002629g0050 Nicotiana tabacum HOM05D002311 ORTHO05D006991 7.2e-21 103.6 74 70.3
Nitab4.5_0006973g0050 Nicotiana tabacum HOM05D002311 ORTHO05D006991 7.2e-21 103.6 74 70.3
Peaxi162Scf00189g00130 Petunia axillaris HOM05D002311 ORTHO05D006991 7.2e-21 103.6 74 70.3
Hund00987 Selenicereus undatus HOM05D002311 ORTHO05D006991 7.2e-21 103.6 74 70.3
Glyma.06G285200 Glycine max HOM05D002311 ORTHO05D006991 9.4e-21 103.2 67 77.6
Glyma.12G120500 Glycine max HOM05D002311 ORTHO05D006991 9.4e-21 103.2 64 81.2
THA.LOC104800851 Tarenaya hassleriana HOM05D002311 ORTHO05D006991 9.4e-21 103.2 64 78.1
HPP92_024631 Vanilla planifolia HOM05D002311 ORTHO05D006991 9.4e-21 103.2 66 77.3
BolC3t14424H Brassica oleracea HOM05D002311 ORTHO05D021978 1.2e-20 102.8 72 72.2
PGSC0003DMG400009402 Solanum tuberosum HOM05D002311 ORTHO05D006991 1.2e-20 102.8 74 70.3
Os01g0752700 Oryza sativa ssp. japonica HOM05D002311 ORTHO05D006991 2.1e-20 102.1 74 68.9
CDE10G1130 Ceratophyllum demersum HOM05D002311 ORTHO05D006991 2.7e-20 101.7 74 68.9
Sed0003615 Sechium edule HOM05D002311 ORTHO05D006991 2.7e-20 101.7 74 70.3
Solyc07g053470.4 Solanum lycopersicum HOM05D002311 ORTHO05D006991 2.7e-20 101.7 74 70.3
Sopen07g027430 Solanum pennellii HOM05D002311 ORTHO05D006991 2.7e-20 101.7 74 70.3
Ah.01g003910 Amaranthus hybridus HOM05D002311 ORTHO05D006991 7.9e-20 100.1 74 68.9
CDE10G0636 Ceratophyllum demersum HOM05D002311 ORTHO05D006991 7.9e-20 100.1 74 67.6
Medtr4g079360 Medicago truncatula HOM05D002311 ORTHO05D006991 7.9e-20 100.1 74 70.3
EL10Ac9g20850 Beta vulgaris HOM05D002311 ORTHO05D006991 1.8e-19 99.0 74 68.9
AUR62024076 Chenopodium quinoa HOM05D002311 ORTHO05D021978 3.9e-19 97.8 64 75.0
Mapoly0004s0256 Marchantia polymorpha HOM05D002311 ORTHO05D006991 3.9e-19 97.8 74 60.8
AUR62035384 Chenopodium quinoa HOM05D002311 ORTHO05D006991 5.1e-19 97.4 64 75.0
Pp3c21_14460 Physcomitrium patens HOM05D002311 ORTHO05D006991 5.1e-19 97.4 75 65.3
VMungo1127G2025 Vigna mungo HOM05D002311 ORTHO05D006991 5.1e-19 97.4 74 68.9
Migut.H02161 Erythranthe guttata HOM05D002311 ORTHO05D006991 8.8e-19 96.7 74 66.2
SMO228G0089 Selaginella moellendorffii HOM05D002311 ORTHO05D006991 1.5e-18 95.9 71 67.6
CBR_g48662 Chara braunii HOM05D002311 ORTHO05D006991 2.0e-18 95.5 61 73.8
AagrBONN_evm.TU.Sc2ySwM_344.2999 Anthoceros agrestis HOM05D002311 ORTHO05D006991 2.6e-18 95.1 74 63.5
Duzib147G0340 Durio zibethinus HOM05D002311 ORTHO05D006991 3.3e-18 94.7 102 55.9
C03p20460 Brassica napus HOM05D002311 ORTHO05D021978 6.3e-17 90.5 97 54.6
Sabra13G0102700 Salix brachista HOM05D002311 ORTHO05D006991 2.6e-15 85.1 120 45.0
Cfa021021 Carpinus fangiana HOM05D002311 ORTHO05D006991 3.5e-15 84.7 72 54.2
FAN05G1008 Fragaria x ananassa HOM05D002311 ORTHO05D006991 1.7e-14 82.4 47 87.2
MCO16G490 Micromonas commoda HOM05D002311 ORTHO05D006991 1.7e-14 82.4 73 52.1
arahy.Tifrunner.gnm1.ann1.N92LMW Arachis hypogaea HOM05D002311 ORTHO05D006991 2.2e-14 82.0 119 45.4
Cre13.g606000 Chlamydomonas reinhardtii HOM05D002311 ORTHO05D006991 1.1e-13 79.7 71 54.9
Haze_13286 Corylus avellana HOM05D002311 ORTHO05D006991 3.2e-13 78.2 47 78.7
arahy.Tifrunner.gnm1.ann1.ERJJ2A Arachis hypogaea HOM05D002311 ORTHO05D006991 5.5e-13 77.4 45 82.2
BcaB01g04069 Brassica carinata HOM05D002311 ORTHO05D006991 5.5e-13 77.4 57 71.9
SHI10500 Sapria himalayana HOM05D002311 ORTHO05D006991 3.6e-12 74.7 55 70.9
Actinidia11121 Actinidia chinensis HOM05D000064 ORTHO05D006991 6.7e-11 70.5 64 64.1
MCO16G206 Micromonas commoda HOM05D002311 ORTHO05D006529 1.7e-06 55.8 61 42.6


User provided reference genes

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