Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 4.1e-220 767.7 370 100.0
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.5e-171 605.1 306 94.8
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 8.1e-67 258.5 325 47.1
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.3e-66 256.9 325 46.8
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 3.1e-66 256.5 325 46.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 3.1e-66 256.5 325 46.8
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.1e-66 256.5 326 46.6
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 5.2e-66 255.8 325 46.5
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 5.2e-66 255.8 325 46.5
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 5.2e-66 255.8 325 46.8
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 6.8e-66 255.4 325 46.8
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 8.9e-66 255.0 325 46.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.9e-66 255.0 325 46.5
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.2e-65 254.6 325 45.8
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.5e-65 254.2 325 46.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.6e-65 253.4 325 46.2
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 3.4e-65 253.1 325 45.8
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 3.4e-65 253.1 325 46.5
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.4e-65 253.1 325 45.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 3.4e-65 253.1 325 45.8
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.4e-65 252.7 325 45.8
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 4.4e-65 252.7 325 45.8
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 4.4e-65 252.7 325 46.2
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.8e-65 252.3 325 47.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.8e-65 252.3 325 45.8
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 5.8e-65 252.3 325 46.2
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.6e-65 251.9 325 45.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 7.6e-65 251.9 325 46.2
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 9.9e-65 251.5 325 45.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 9.9e-65 251.5 325 46.5
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 9.9e-65 251.5 325 45.8
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 9.9e-65 251.5 325 45.8
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 9.9e-65 251.5 325 45.5
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.3e-64 251.1 325 46.5
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.3e-64 251.1 325 45.8
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.3e-64 251.1 325 45.8
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.7e-64 250.8 325 45.8
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.2e-64 250.4 359 43.7
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.2e-64 250.4 325 45.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.2e-64 250.4 325 46.2
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 2.9e-64 250.0 325 45.5
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.9e-64 250.0 325 44.9
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 3.7e-64 249.6 325 45.5
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 3.7e-64 249.6 325 45.5
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.7e-64 249.6 325 45.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 4.9e-64 249.2 325 46.2
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.9e-64 249.2 325 45.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 4.9e-64 249.2 325 46.2
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 6.4e-64 248.8 325 45.8
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 6.4e-64 248.8 325 45.8
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 6.4e-64 248.8 325 45.8
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.4e-64 248.8 325 45.5
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 6.4e-64 248.8 325 46.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 6.4e-64 248.8 325 45.2
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 6.4e-64 248.8 325 45.2
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.1e-63 248.1 325 44.9
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.1e-63 248.1 325 45.5
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.1e-63 248.1 325 45.2
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.1e-63 248.1 325 45.2
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.1e-63 248.1 329 45.3
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.4e-63 247.7 325 45.2
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.4e-63 247.7 325 44.9
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.4e-63 247.7 329 45.6
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.9e-63 247.3 325 45.2
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.9e-63 247.3 329 45.3
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.9e-63 247.3 321 46.4
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.9e-63 247.3 325 44.9
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 2.4e-63 246.9 329 45.3
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 2.4e-63 246.9 325 45.8
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.1e-63 246.1 325 45.2
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.1e-63 246.1 325 44.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 4.1e-63 246.1 325 43.7
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 5.4e-63 245.7 325 44.9
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 7.1e-63 245.4 329 45.3
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 9.2e-63 245.0 325 45.2
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 9.2e-63 245.0 325 44.9
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.2e-63 245.0 325 44.9
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-62 244.6 325 45.5
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.2e-62 244.6 325 44.9
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.6e-62 244.2 325 45.8
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.7e-62 243.4 325 44.6
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.5e-62 243.0 325 44.9
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.5e-62 243.0 325 44.9
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.5e-62 243.0 325 43.4
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 3.5e-62 243.0 325 44.9
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 3.5e-62 243.0 325 44.9
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 4.6e-62 242.7 325 44.9
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 7.8e-62 241.9 325 44.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 7.8e-62 241.9 327 44.3
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.0e-61 241.5 325 45.2
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.0e-61 241.5 325 44.9
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.3e-61 241.1 325 44.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.3e-61 240.4 325 44.3
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 3.0e-61 240.0 325 43.1
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.0e-61 240.0 327 43.1
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 5.1e-61 239.2 325 44.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 6.6e-61 238.8 325 43.1
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.1e-60 238.0 325 45.5
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.5e-60 237.7 364 41.2
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.5e-60 237.7 330 42.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 3.3e-60 236.5 326 43.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.6e-59 234.2 320 45.6
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.1e-59 233.8 325 41.8
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 3.6e-59 233.0 324 42.6
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 6.2e-59 232.3 326 42.6
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 6.2e-59 232.3 334 42.2
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.4e-58 230.3 317 43.5
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.4e-58 230.3 349 41.8
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.0e-58 229.6 317 43.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.6e-57 226.9 306 43.8
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.8e-57 225.7 318 43.4
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.8e-57 225.7 318 43.4
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.3e-56 224.6 303 44.6
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.3e-56 224.6 379 40.6
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.8e-56 223.0 325 41.5
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 7.1e-55 218.8 319 41.7
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 9.3e-55 218.4 325 40.9
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.0e-53 214.9 308 44.2
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 6.6e-53 212.2 313 42.2
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.1e-52 211.5 325 41.2
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.9e-52 210.7 269 47.6
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.3e-52 209.9 269 48.0
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 9.6e-52 208.4 325 40.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.3e-50 202.6 325 39.1
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.3e-48 198.0 331 41.1
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.4e-47 193.7 256 48.0
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.0e-46 189.1 292 41.1
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.1e-44 184.9 216 45.4
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 2.5e-44 183.7 217 45.2
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 5.6e-44 182.6 324 37.3
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.1e-42 178.3 227 47.6
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 3.1e-42 176.8 368 34.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 9.0e-42 175.3 220 48.6
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 9.9e-41 171.8 212 43.4
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.4e-39 167.9 223 45.3
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 9.3e-39 165.2 220 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.6e-38 164.5 332 35.8
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.5e-36 157.1 164 54.9
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 5.6e-36 156.0 322 33.9
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 6.2e-35 152.5 216 45.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.4e-34 150.6 216 45.4
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.6e-33 147.1 315 33.0
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 5.8e-33 146.0 326 31.3
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 3.2e-23 113.6 277 28.9
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 5.9e-17 92.8 118 40.7
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.6e-09 67.4 73 53.4


User provided reference genes

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