Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 3.3e-52 208.0 97 100.0
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 6.0e-30 134.0 77 81.8
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.1e-28 129.8 80 77.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 2.1e-27 125.6 78 76.9
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 9.0e-26 120.2 80 73.8
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 9.9e-25 116.7 75 73.3
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.8e-24 114.8 80 67.5
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 3.8e-24 114.8 66 78.8
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 8.4e-24 113.6 86 65.1
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 8.4e-24 113.6 68 75.0
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.1e-23 113.2 80 66.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.4e-23 112.8 69 75.4
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.9e-23 112.5 68 72.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.4e-23 112.1 76 71.1
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.2e-23 111.7 68 72.1
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 3.2e-23 111.7 68 75.0
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.2e-23 111.3 68 75.0
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.5e-23 110.9 82 63.4
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 7.1e-23 110.5 81 65.4
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 7.1e-23 110.5 68 72.1
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 9.3e-23 110.2 80 66.2
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 9.3e-23 110.2 80 65.0
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 9.3e-23 110.2 82 62.2
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.2e-22 109.8 81 63.0
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.2e-22 109.8 68 70.6
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.6e-22 109.4 61 80.3
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.7e-22 108.6 68 72.1
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.7e-22 108.6 68 72.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.7e-22 108.6 68 72.1
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.7e-22 108.6 86 60.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.7e-22 108.6 68 70.6
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 2.7e-22 108.6 68 72.1
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 3.5e-22 108.2 65 76.9
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 6.0e-22 107.5 79 68.4
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.0e-22 107.5 80 62.5
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 7.9e-22 107.1 78 62.8
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 7.9e-22 107.1 78 65.4
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 7.9e-22 107.1 80 63.8
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.0e-21 106.7 94 58.5
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.0e-21 106.7 80 65.0
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.0e-21 106.7 80 65.0
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.0e-21 106.7 95 53.7
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.3e-21 106.3 68 70.6
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.3e-21 106.3 67 73.1
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-21 106.3 68 69.1
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.3e-21 106.3 84 66.7
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.3e-21 106.3 68 75.0
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.3e-21 106.3 68 75.0
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.8e-21 105.9 80 61.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.8e-21 105.9 70 68.6
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.8e-21 105.9 80 62.5
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.8e-21 105.9 80 62.5
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.3e-21 105.5 80 65.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.3e-21 105.5 84 65.5
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.3e-21 105.5 80 62.5
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.0e-21 105.1 68 70.6
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.9e-21 104.8 71 67.6
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 3.9e-21 104.8 78 65.4
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.9e-21 104.8 68 69.1
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.9e-21 104.8 68 69.1
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.9e-21 104.8 79 64.6
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.9e-21 104.8 80 61.2
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 5.1e-21 104.4 68 67.6
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 5.1e-21 104.4 68 72.1
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 5.1e-21 104.4 68 72.1
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 5.1e-21 104.4 68 72.1
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 6.7e-21 104.0 80 61.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.7e-21 104.0 79 64.6
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 6.7e-21 104.0 78 64.1
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 8.7e-21 103.6 80 58.8
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 8.7e-21 103.6 87 59.8
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.1e-20 103.2 79 63.3
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.1e-20 103.2 68 69.1
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.5e-20 102.8 78 64.1
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.5e-20 102.8 80 61.2
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-20 102.8 68 66.2
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-20 102.8 68 66.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-20 102.8 68 66.2
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-20 102.8 68 66.2
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.5e-20 102.8 80 60.0
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.5e-20 102.8 87 58.6
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.9e-20 102.4 80 58.8
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.5e-20 102.1 68 67.6
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 3.3e-20 101.7 76 61.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 3.3e-20 101.7 78 62.8
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.3e-20 101.7 68 67.6
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 3.3e-20 101.7 78 62.8
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 3.3e-20 101.7 68 69.1
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 3.3e-20 101.7 68 70.6
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.3e-20 101.3 65 72.3
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 5.6e-20 100.9 68 64.7
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 5.6e-20 100.9 87 57.5
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 7.4e-20 100.5 68 66.2
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 9.6e-20 100.1 78 61.5
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 9.6e-20 100.1 64 75.0
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 9.6e-20 100.1 68 69.1
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 9.6e-20 100.1 65 73.8
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 9.6e-20 100.1 80 61.2
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.6e-19 99.4 68 69.1
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.8e-19 98.6 68 64.7
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 6.2e-19 97.4 65 69.2
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 6.2e-19 97.4 58 72.4
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.1e-18 96.7 58 74.1
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-18 96.7 72 70.8
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.4e-18 96.3 64 71.9
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.8e-18 95.9 65 69.2
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.1e-18 95.1 64 70.3
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.1e-18 95.1 64 70.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.1e-18 95.1 72 62.5
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 5.3e-18 94.4 78 57.7
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 9.0e-18 93.6 70 67.1
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.5e-17 92.8 62 69.4
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.5e-17 92.8 62 69.4
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.0e-17 92.4 70 67.1
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 3.4e-17 91.7 64 67.2
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.3e-16 89.7 69 56.5
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 4.9e-16 87.8 44 84.1
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 6.5e-16 87.4 68 55.9
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.9e-15 85.9 79 49.4
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.5e-15 85.5 68 60.3
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 9.3e-15 83.6 67 59.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 4.6e-14 81.3 115 41.7
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.8e-13 79.3 67 55.2
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.0e-13 78.6 61 65.6
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 3.3e-12 75.1 44 77.3
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 3.3e-12 75.1 44 77.3
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.6e-11 72.8 36 86.1
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-10 69.3 49 63.3
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.4e-07 59.7 32 75.0
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 5.5e-07 57.8 32 78.1
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 5.5e-07 57.8 32 78.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 3.6e-06 55.1 28 82.1
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 4.6e-06 54.7 32 75.0


User provided reference genes

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