Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 9.8e-187 656.8 357 100.0
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 4.2e-153 545.0 350 84.3
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 6.4e-146 521.2 362 82.0
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 5.0e-130 468.4 344 73.5
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 3.2e-129 465.7 326 78.2
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.2e-128 463.8 298 83.6
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.6e-128 463.4 328 78.4
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 6.1e-128 461.5 353 71.7
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 3.9e-127 458.8 327 76.1
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 6.7e-127 458.0 305 79.0
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 1.9e-126 456.4 358 73.2
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.5e-126 456.1 331 74.0
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 7.4e-126 454.5 328 74.1
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 7.4e-126 454.5 356 72.5
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.6e-125 453.4 352 70.2
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.6e-125 453.4 353 71.7
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 2.8e-125 452.6 335 74.3
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 3.7e-125 452.2 358 71.8
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 4.8e-125 451.8 366 71.6
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 6.3e-125 451.4 298 81.2
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 6.3e-125 451.4 298 81.2
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 8.2e-125 451.1 318 77.7
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 8.2e-125 451.1 264 90.9
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 8.2e-125 451.1 349 72.8
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.1e-124 450.7 344 71.2
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.1e-124 450.7 336 72.0
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 1.4e-124 450.3 332 75.6
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 2.4e-124 449.5 350 71.1
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 5.3e-124 448.4 324 76.5
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 6.9e-124 448.0 263 90.9
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 6.9e-124 448.0 334 73.4
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 9.1e-124 447.6 353 70.5
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 9.1e-124 447.6 294 81.0
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.2e-123 447.2 331 72.8
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.0e-123 446.4 344 70.3
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 2.0e-123 446.4 351 72.4
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 4.5e-123 445.3 294 82.7
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 4.5e-123 445.3 298 80.5
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 5.9e-123 444.9 353 71.1
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 5.9e-123 444.9 338 71.9
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 7.7e-123 444.5 292 82.2
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.3e-122 443.7 284 83.1
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.3e-122 443.7 284 82.7
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.7e-122 443.4 315 77.1
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 2.9e-122 442.6 348 72.1
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 3.8e-122 442.2 328 75.3
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 5.0e-122 441.8 284 82.7
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.1e-121 440.7 284 82.4
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 1.9e-121 439.9 363 68.0
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 1.9e-121 439.9 333 72.1
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 2.5e-121 439.5 361 69.0
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 2.5e-121 439.5 327 75.5
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 4.2e-121 438.7 268 86.9
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 5.5e-121 438.3 314 76.4
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 5.5e-121 438.3 262 87.0
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 5.5e-121 438.3 365 68.2
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 7.2e-121 438.0 358 69.6
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 2.7e-120 436.0 310 76.1
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 4.6e-120 435.3 359 69.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 4.6e-120 435.3 289 80.6
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 1.0e-119 434.1 318 75.8
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.3e-119 433.0 298 77.2
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 2.3e-119 433.0 312 74.7
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 2.3e-119 433.0 296 79.4
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 2.3e-119 433.0 298 78.2
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 5.1e-119 431.8 289 78.9
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 5.1e-119 431.8 289 78.9
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 5.1e-119 431.8 348 69.8
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 5.1e-119 431.8 299 77.6
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 2.0e-118 429.9 289 78.5
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 2.6e-118 429.5 309 76.1
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 2.6e-118 429.5 298 77.2
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.3e-118 429.1 290 78.3
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 4.4e-118 428.7 299 77.3
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 5.7e-118 428.3 290 79.3
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 2.2e-117 426.4 265 84.2
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 3.7e-117 425.6 298 76.5
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 8.2e-117 424.5 265 83.8
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.1e-116 424.1 276 84.1
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.4e-115 419.1 352 66.2
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 7.2e-113 411.4 268 82.5
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 9.4e-113 411.0 294 74.5
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 2.1e-112 409.8 289 75.8
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.3e-109 400.6 322 71.4
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.3e-109 400.6 363 63.9
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.4e-108 396.4 306 70.9
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.2e-107 394.0 318 67.3
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.1e-105 387.5 311 71.1
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.9e-105 386.7 288 74.0
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.9e-105 386.7 273 77.3
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 4.2e-105 385.6 309 70.2
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 6.1e-104 381.7 294 73.1
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 8.8e-103 377.9 273 72.2
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 7.5e-102 374.8 256 77.7
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.3e-101 374.0 319 66.5
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.8e-101 372.1 384 60.2
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 2.4e-100 369.8 324 66.0
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 3.1e-100 369.4 372 60.8
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 4.1e-100 369.0 290 70.7
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 4.2e-97 359.0 261 73.6
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.2e-96 357.5 218 86.2
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 1.0e-95 354.4 257 72.4
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 2.8e-93 346.3 363 59.5
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.9e-90 336.3 196 90.8
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 1.6e-88 330.5 301 64.5
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 2.3e-87 326.6 200 84.5
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 4.5e-83 312.4 256 69.1
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.2e-78 297.7 261 63.2
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 7.8e-75 285.0 238 68.5
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.2e-72 277.7 307 56.4
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 2.7e-67 260.0 245 60.0
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 6.0e-67 258.8 245 57.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 3.4e-62 243.0 270 56.3
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.4e-60 235.7 259 56.4
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 6.0e-59 232.3 276 51.4
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 7.3e-57 225.3 230 62.2
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 5.8e-54 215.7 167 72.5
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.1e-48 197.2 140 78.6
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.7e-48 196.1 135 80.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.8e-40 170.2 98 91.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 7.6e-38 162.2 142 69.0
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 9.3e-36 155.2 204 52.5
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 3.0e-34 150.2 93 82.8
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.1e-32 144.1 157 55.4
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 6.2e-32 142.5 157 54.8
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.2e-27 128.3 139 55.4
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 4.9e-21 106.3 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 4.8e-16 89.7 96 55.2
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 3.1e-15 87.0 234 34.6
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 6.9e-15 85.9 60 73.3
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.0e-10 70.5 47 76.6
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 3.4e-06 57.0 41 73.2
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.9e-06 56.2 29 100.0


User provided reference genes

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