Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.5e-144 516.2 253 100.0
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 4.1e-54 215.7 220 56.4
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.4e-41 174.1 200 53.0
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 4.9e-31 139.0 197 44.7
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.3e-28 130.2 198 42.9
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 4.3e-27 125.9 193 43.0
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 5.2e-25 119.0 244 37.3
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 9.9e-24 114.8 244 36.5
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 1.3e-23 114.4 158 43.7
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 1.7e-23 114.0 231 36.4
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.4e-23 112.1 235 37.0
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.1e-22 111.3 158 44.3
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 7.1e-22 108.6 246 34.1
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 9.2e-22 108.2 245 33.5
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 9.2e-22 108.2 158 41.1
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 3.5e-21 106.3 187 37.4
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.8e-21 105.1 158 43.0
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.0e-20 104.8 182 40.1
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.3e-20 104.4 200 38.0
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 1.3e-20 104.4 174 40.8
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 2.3e-20 103.6 204 39.7
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.3e-20 103.6 231 35.9
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 3.9e-20 102.8 173 39.3
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 3.9e-20 102.8 200 37.5
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 1.5e-19 100.9 203 35.5
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 1.5e-19 100.9 223 34.1
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.5e-19 100.9 235 35.7
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 5.6e-19 99.0 203 37.9
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 5.6e-19 99.0 213 35.7
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.6e-18 97.4 229 34.5
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.8e-18 96.7 229 34.9
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 2.8e-18 96.7 159 41.5
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 2.8e-18 96.7 199 36.2
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 2.8e-18 96.7 207 35.7
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 4.7e-18 95.9 228 36.0
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 6.2e-18 95.5 213 38.0
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 6.2e-18 95.5 238 31.9
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.1e-18 95.1 132 41.7
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 8.1e-18 95.1 202 36.1
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 1.1e-17 94.7 201 34.8
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.1e-17 94.7 225 32.0
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 1.8e-17 94.0 198 36.4
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 1.8e-17 94.0 177 37.3
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 2.4e-17 93.6 199 38.7
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 4.0e-17 92.8 187 37.4
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 8.9e-17 91.7 212 35.8
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.5e-16 90.9 219 34.2
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 2.0e-16 90.5 204 35.3
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.6e-16 90.1 141 40.4
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 2.6e-16 90.1 196 37.8
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.4e-16 89.7 132 40.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 9.9e-16 88.2 213 35.2
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 1.7e-15 87.4 218 31.7
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.7e-15 87.4 188 35.1
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 1.7e-15 87.4 176 34.1
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 2.2e-15 87.0 154 42.2
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 4.9e-15 85.9 170 35.3
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.4e-15 85.5 173 35.3
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.1e-14 84.7 229 34.9
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.1e-14 84.7 188 33.5
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.4e-14 84.3 150 35.3
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.4e-14 83.6 207 34.8
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 2.4e-14 83.6 132 37.9
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 4.1e-14 82.8 180 33.9
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 4.1e-14 82.8 235 30.2
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 4.1e-14 82.8 104 49.0
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 9.2e-14 81.6 223 34.5
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 9.2e-14 81.6 197 32.5
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.6e-13 80.9 238 31.1
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 2.1e-13 80.5 222 32.4
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 2.1e-13 80.5 233 30.9
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 2.1e-13 80.5 213 31.5
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 2.7e-13 80.1 225 29.3
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 2.7e-13 80.1 142 40.8
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.7e-13 80.1 133 38.3
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 3.5e-13 79.7 196 30.6
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 3.5e-13 79.7 172 31.4
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 4.6e-13 79.3 98 43.9
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 6.0e-13 79.0 202 32.7
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 7.8e-13 78.6 190 32.1
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.3e-12 77.8 187 32.1
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 3.0e-12 76.6 242 31.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.0e-12 76.6 277 28.5
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.0e-12 76.6 126 40.5
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 3.9e-12 76.3 188 35.1
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 3.9e-12 76.3 187 29.9
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 3.9e-12 76.3 117 40.2
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 3.9e-12 76.3 125 39.2
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 1.1e-11 74.7 224 29.5
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.1e-11 74.7 199 30.2
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.5e-11 74.3 201 32.3
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 1.5e-11 74.3 124 40.3
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 1.9e-11 73.9 227 31.3
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 1.9e-11 73.9 232 30.6
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 1.9e-11 73.9 221 29.4
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.9e-11 73.9 150 36.7
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 3.3e-11 73.2 249 28.9
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 4.3e-11 72.8 154 34.4
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 4.3e-11 72.8 121 38.8
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 4.3e-11 72.8 121 38.8
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 5.6e-11 72.4 250 28.0
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 5.6e-11 72.4 193 32.6
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 7.3e-11 72.0 167 34.1
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 7.3e-11 72.0 167 34.1
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 7.3e-11 72.0 167 34.1
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 7.3e-11 72.0 200 30.0
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.6e-10 70.9 214 33.6
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.6e-10 70.9 214 33.6
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 1.6e-10 70.9 200 31.0
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.6e-10 70.9 186 32.3
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 2.1e-10 70.5 232 28.9
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 3.6e-10 69.7 209 32.5
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 8.1e-10 68.6 166 32.5
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 8.1e-10 68.6 207 30.9
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.1e-09 68.2 218 35.3
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 1.8e-09 67.4 101 43.6
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.8e-09 67.4 87 48.3
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 3.1e-09 66.6 198 33.3
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 5.2e-09 65.9 134 33.6
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 6.9e-09 65.5 180 33.3
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 1.5e-08 64.3 109 38.5
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 1.5e-08 64.3 211 30.8
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 2.0e-08 63.9 209 30.1
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 2.0e-08 63.9 209 30.1
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 2.0e-08 63.9 122 33.6
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 2.6e-08 63.5 145 35.9
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 2.6e-08 63.5 199 32.2
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 3.4e-08 63.2 179 34.6
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 3.4e-08 63.2 121 37.2
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 3.4e-08 63.2 168 35.7
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 3.4e-08 63.2 117 38.5
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.8e-08 62.4 192 30.2
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 7.6e-08 62.0 149 35.6
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.3e-07 61.2 246 26.8
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.7e-07 60.8 131 34.4
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.7e-07 60.8 118 39.0
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.9e-07 59.3 167 29.9
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.4e-07 58.9 212 26.9
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 1.9e-06 57.4 164 28.0
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 3.2e-06 56.6 193 29.0
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 3.2e-06 56.6 90 43.3
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 3.2e-06 56.6 184 26.6
VMungo0251G0642 Vigna mungo HOM05D003792 ORTHO05D003195 5.4e-06 55.8 177 31.1
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 7.1e-06 55.5 189 33.9
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 7.1e-06 55.5 146 29.5


User provided reference genes

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