Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 9.4e-217 756.5 370 100.0
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.9e-180 636.0 370 81.9
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 5.4e-180 634.4 370 80.3
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 7.1e-180 634.0 370 81.9
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.2e-179 633.3 371 81.9
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 2.1e-179 632.5 370 80.5
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 4.6e-179 631.3 370 80.5
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.0e-178 628.6 370 80.8
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.1e-177 626.7 372 80.4
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 4.3e-177 624.8 370 80.5
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 7.3e-177 624.0 370 79.5
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 7.3e-177 624.0 370 80.0
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.2e-176 623.2 370 80.0
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.2e-176 623.2 370 80.3
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.2e-176 623.2 370 80.3
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.6e-176 622.9 370 80.8
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.6e-176 622.9 370 79.2
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 2.8e-176 622.1 370 79.2
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 4.7e-176 621.3 370 79.7
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 4.7e-176 621.3 370 78.9
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 1.1e-175 620.2 371 79.5
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 2.4e-175 619.0 370 78.9
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.1e-175 618.6 367 79.6
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 4.0e-175 618.2 370 79.2
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 4.0e-175 618.2 370 79.2
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 4.0e-175 618.2 370 78.6
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 4.0e-175 618.2 370 78.9
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 5.2e-175 617.8 371 79.5
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 5.2e-175 617.8 370 78.6
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 6.8e-175 617.5 371 79.0
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 6.8e-175 617.5 370 79.2
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.2e-174 616.7 370 78.4
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.5e-174 616.3 370 78.9
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.0e-174 615.9 370 78.4
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 2.6e-174 615.5 370 79.7
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 4.4e-174 614.8 370 78.9
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 5.8e-174 614.4 373 77.7
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 9.9e-174 613.6 370 77.6
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 9.9e-174 613.6 370 77.6
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.3e-173 613.2 373 77.5
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.7e-173 612.8 377 78.2
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.2e-173 612.5 370 77.3
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 2.2e-173 612.5 370 77.6
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 3.8e-173 611.7 371 77.4
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 6.4e-173 610.9 373 77.2
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 8.4e-173 610.5 371 77.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-172 610.1 370 78.4
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.9e-172 609.4 374 77.3
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 3.2e-172 608.6 370 79.2
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.2e-172 608.6 371 77.1
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.2e-172 608.6 371 77.1
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 4.2e-172 608.2 370 78.1
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 4.2e-172 608.2 371 76.8
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 7.1e-172 607.4 369 77.0
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.2e-171 606.7 370 77.8
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 3.5e-171 605.1 370 78.4
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 3.5e-171 605.1 371 77.6
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 4.6e-171 604.7 373 77.5
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 4.6e-171 604.7 363 78.5
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 4.6e-171 604.7 371 77.4
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 6.0e-171 604.4 370 78.9
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 6.0e-171 604.4 373 78.6
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 6.0e-171 604.4 384 75.5
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 7.8e-171 604.0 409 71.9
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.3e-170 603.2 367 78.5
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 1.7e-170 602.8 370 78.9
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.7e-170 602.8 371 76.3
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.7e-170 602.8 370 78.1
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.0e-170 602.1 371 77.9
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 5.1e-170 601.3 371 76.3
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 5.1e-170 601.3 384 76.3
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 6.6e-170 600.9 371 77.4
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.9e-169 599.4 369 76.7
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 3.3e-169 598.6 364 78.3
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 4.3e-169 598.2 370 77.8
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.3e-169 598.2 373 77.7
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 5.6e-169 597.8 397 73.0
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 7.3e-169 597.4 371 76.5
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 1.3e-168 596.7 361 78.4
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.8e-168 595.5 371 77.1
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 2.8e-168 595.5 366 78.7
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 4.8e-168 594.7 371 76.0
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 6.2e-168 594.3 371 76.8
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 6.2e-168 594.3 371 78.2
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 8.1e-168 594.0 370 77.6
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.1e-167 593.6 371 76.8
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 1.8e-167 592.8 371 75.7
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 9.0e-167 590.5 371 75.2
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 9.0e-167 590.5 364 76.6
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.5e-166 589.7 364 76.9
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 3.4e-166 588.6 370 75.7
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 4.4e-166 588.2 351 78.9
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 9.9e-166 587.0 364 77.2
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.3e-165 586.6 370 75.4
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 3.8e-165 585.1 356 76.7
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 6.4e-165 584.3 369 76.7
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.9e-164 582.8 362 75.4
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 4.2e-164 581.6 362 75.4
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 4.2e-164 581.6 362 75.4
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 4.2e-164 581.6 362 75.4
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 4.2e-164 581.6 362 75.4
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 4.2e-164 581.6 362 75.4
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 4.2e-164 581.6 359 76.3
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 9.3e-164 580.5 370 74.6
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.3e-162 576.6 371 76.3
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.7e-162 576.2 402 70.6
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.3e-162 575.9 370 75.4
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.5e-161 573.2 370 73.5
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.9e-161 572.8 370 75.7
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.9e-161 572.8 350 78.0
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 3.3e-161 572.0 358 76.5
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 5.6e-161 571.2 366 75.7
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.3e-160 570.1 370 74.9
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 2.1e-160 569.3 371 74.4
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 3.6e-160 568.5 371 74.4
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 6.2e-160 567.8 372 75.0
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 1.1e-159 567.0 360 75.6
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 4.0e-159 565.1 371 72.2
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 9.0e-159 563.9 366 74.3
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 3.8e-157 558.5 369 72.9
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 8.4e-157 557.4 355 76.1
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.4e-156 555.8 371 73.3
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.4e-156 555.8 353 76.8
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 5.4e-156 554.7 371 72.8
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 7.1e-156 554.3 368 70.1
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 1.6e-155 553.1 433 64.7
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 4.6e-155 551.6 368 69.8
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 6.7e-154 547.7 362 73.5
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 4.3e-153 545.0 361 74.2
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.3e-152 543.5 351 74.4
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 2.1e-152 542.7 351 73.5
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 3.1e-151 538.9 362 73.2
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 3.4e-150 535.4 361 71.7
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.0e-149 533.9 325 81.2
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 7.1e-148 527.7 367 69.2
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 4.6e-147 525.0 359 71.3
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 2.6e-142 509.2 373 68.1
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 6.5e-141 504.6 370 63.8
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 2.5e-140 502.7 397 65.2
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 3.2e-140 502.3 361 67.9
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 9.3e-140 500.7 370 64.1
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.8e-138 496.5 370 63.8
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 2.3e-138 496.1 370 63.0
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 3.0e-138 495.7 370 63.5
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 2.0e-134 483.0 364 64.0
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 3.4e-134 482.3 371 62.3
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.4e-132 476.9 372 65.9
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.2e-132 475.3 283 79.9
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 4.2e-132 475.3 288 79.9
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 5.5e-132 474.9 368 64.1
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 8.8e-130 467.6 360 63.6
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 5.7e-129 464.9 279 78.5
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.4e-124 450.3 327 67.9
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 2.5e-124 449.5 277 77.6
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 4.2e-124 448.7 281 76.5
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 7.9e-123 444.5 280 74.6
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 3.0e-122 442.6 278 75.9
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 6.7e-122 441.4 346 64.7
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 3.7e-120 435.6 385 56.4
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.8e-114 416.8 366 53.3
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 2.3e-114 416.4 239 82.0
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 8.8e-114 414.5 275 74.2
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 4.1e-111 405.6 402 51.0
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.9e-108 396.7 270 70.4
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.7e-107 392.1 370 53.5
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 5.2e-106 388.7 274 67.5
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-86 324.3 197 76.6
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 7.8e-86 321.6 273 60.8
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.9e-85 319.7 198 75.8
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.0e-82 311.2 222 68.0
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 4.4e-81 305.8 177 81.9
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 1.4e-66 257.7 171 73.1
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 6.2e-51 205.7 266 47.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.2e-48 197.2 379 31.4
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 7.4e-44 182.2 441 28.8
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.8e-42 177.6 113 77.9
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 6.9e-42 175.6 406 26.6
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 9.0e-42 175.3 120 72.5
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 9.0e-42 175.3 148 64.9
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 2.2e-40 170.6 120 70.8
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 2.6e-33 147.1 304 29.6
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 6.5e-32 142.5 115 60.0
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 8.7e-29 132.1 84 73.8
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 3.2e-07 60.5 68 44.1
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 4.2e-07 60.1 49 65.3


User provided reference genes

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