Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0146841 Helianthus annuus HOM05D001317 ORTHO05D001164 4.5e-23 110.5 61 100.0
HanXRQChr15g0491581 Helianthus annuus HOM05D001317 ORTHO05D001164 6.9e-16 86.7 61 80.3
HanXRQChr15g0491981 Helianthus annuus HOM05D001317 ORTHO05D001164 1.5e-15 85.5 61 78.7
Lsat_1_v5_gn_0_7361 Lactuca sativa HOM05D001317 ORTHO05D001164 3.8e-14 80.9 61 73.8
ECA232G3340 Erigeron canadensis HOM05D001317 ORTHO05D001164 5.5e-13 77.0 59 74.6
Lj5g0018470 Lotus japonicus HOM05D001317 ORTHO05D001164 3.0e-11 71.2 61 62.3
Ciclev10032972m.g Citrus clementina HOM05D001317 ORTHO05D001164 1.5e-10 68.9 60 63.3
Cc02_g09990 Coffea canephora HOM05D001317 ORTHO05D001164 2.0e-10 68.6 61 62.3
Cfa011239 Carpinus fangiana HOM05D001317 ORTHO05D001164 4.4e-10 67.4 61 63.9
Phvul.007G104200 Phaseolus vulgaris HOM05D001317 ORTHO05D001164 4.4e-10 67.4 61 60.7
Lj2C29T21 Lonicera japonica HOM05D001317 ORTHO05D001164 5.7e-10 67.0 61 57.4
VMungo0720G2072 Vigna mungo HOM05D001317 ORTHO05D001164 9.7e-10 66.2 61 59.0
Haze_02591 Corylus avellana HOM05D001317 ORTHO05D001164 1.3e-09 65.9 61 62.3
Lalb_Chr02g0151421 Lupinus albus HOM05D001317 ORTHO05D001164 1.3e-09 65.9 61 60.7
Ca_10500_v3 Cicer arietinum L. HOM05D001317 ORTHO05D001164 1.7e-09 65.5 61 59.0
CiPaw.14G029500 Carya illinoinensis HOM05D001317 ORTHO05D001164 2.2e-09 65.1 63 60.3
Glyma.10G202700 Glycine max HOM05D001317 ORTHO05D001164 2.2e-09 65.1 61 59.0
Cpa.g.sc19.16 Carica papaya HOM05D001317 ORTHO05D001164 2.8e-09 64.7 62 61.3
CiPaw.13G037300 Carya illinoinensis HOM05D001317 ORTHO05D001164 4.8e-09 63.9 62 59.7
FvH4_1g27500 Fragaria vesca HOM05D001317 ORTHO05D001164 4.8e-09 63.9 61 59.0
FAN19G1423 Fragaria x ananassa HOM05D001317 ORTHO05D001164 4.8e-09 63.9 61 59.0
FAN23G1439 Fragaria x ananassa HOM05D001317 ORTHO05D001164 4.8e-09 63.9 61 59.0
FAN23G2475 Fragaria x ananassa HOM05D001317 ORTHO05D001164 4.8e-09 63.9 61 59.0
FAN28G0119 Fragaria x ananassa HOM05D001317 ORTHO05D001164 4.8e-09 63.9 61 59.0
Psat6g176880 Pisum sativum HOM05D001317 ORTHO05D001164 4.8e-09 63.9 61 59.0
Glyma.20G187600 Glycine max HOM05D001317 ORTHO05D001164 6.3e-09 63.5 59 57.6
MD07G1067500 Malus domestica HOM05D001317 ORTHO05D001164 8.2e-09 63.2 57 59.6
RcHm_v2.0_Chr3g0489011 Rosa chinensis HOM05D001317 ORTHO05D001164 8.2e-09 63.2 61 59.0
Thecc.10G104800 Theobroma cacao HOM05D001317 ORTHO05D001164 8.2e-09 63.2 62 61.3
TPR.G2502 Trifolium pratense HOM05D001317 ORTHO05D001164 8.2e-09 63.2 61 57.4
QL04p042565 Quercus lobata HOM05D001317 ORTHO05D001164 1.4e-08 62.4 59 55.9
QL04p042580 Quercus lobata HOM05D001317 ORTHO05D001164 1.4e-08 62.4 59 55.9
Prupe.2G084700 Prunus persica HOM05D001317 ORTHO05D001164 1.8e-08 62.0 61 55.7
Medtr1g492930 Medicago truncatula HOM05D001317 ORTHO05D001164 4.1e-08 60.8 61 55.7
Duzib114G0983 Durio zibethinus HOM05D001317 ORTHO05D001164 5.3e-08 60.5 59 57.6
FAN26G3147 Fragaria x ananassa HOM05D001317 ORTHO05D001164 5.3e-08 60.5 61 57.4
MD02G1248800 Malus domestica HOM05D001317 ORTHO05D001164 5.3e-08 60.5 57 54.4
arahy.Tifrunner.gnm1.ann1.95H5CE Arachis hypogaea HOM05D001317 ORTHO05D001164 6.9e-08 60.1 61 55.7
Actinidia34710 Actinidia chinensis HOM05D001317 ORTHO05D001164 9.1e-08 59.7 61 57.4
Hma1.2p1_0352F.1_g132990 Hydrangea macrophylla HOM05D001317 ORTHO05D001164 9.1e-08 59.7 59 54.2
Dinv20807 Davidia involucrata HOM05D001317 ORTHO05D001164 1.2e-07 59.3 59 55.9
CSS0040261 Camellia sinensis var. sinensis HOM05D001317 ORTHO05D001164 2.0e-07 58.5 59 52.5
CSS0010573 Camellia sinensis var. sinensis HOM05D001317 ORTHO05D001164 2.6e-07 58.2 59 52.5
Hma1.2p1_0246F.1_g101750 Hydrangea macrophylla HOM05D001317 ORTHO05D001164 2.6e-07 58.2 59 52.5
Potri.010G235600 Populus trichocarpa HOM05D001317 ORTHO05D001164 3.4e-07 57.8 57 57.9
CANSAT56G2006 Cannabis sativa HOM05D001317 ORTHO05D001164 4.5e-07 57.4 58 56.9
Nitab4.5_0005390g0050 Nicotiana tabacum HOM05D001317 ORTHO05D001164 4.5e-07 57.4 64 56.2
THA.LOC104823107 Tarenaya hassleriana HOM05D001317 ORTHO05D001164 4.5e-07 57.4 65 60.0
Aa31LG10G7830 Aethionema arabicum HOM05D001317 ORTHO05D001164 7.7e-07 56.6 55 58.2
Carub.0005s1937 Capsella rubella HOM05D001317 ORTHO05D001164 1.0e-06 56.2 54 59.3
CARHR162780 Cardamine hirsuta HOM05D001317 ORTHO05D001164 1.0e-06 56.2 53 60.4
Peaxi162Scf00244g01120 Petunia axillaris HOM05D001317 ORTHO05D001164 1.3e-06 55.8 64 54.7
SGA_v2.0_scaffold83G26421 Striga asiatica HOM05D001317 ORTHO05D001164 1.3e-06 55.8 59 52.5
BcaC07g39653 Brassica carinata HOM05D001317 ORTHO05D001164 1.7e-06 55.5 53 60.4
C08p28150 Brassica napus HOM05D000146 ORTHO05D000178 1.7e-06 55.5 53 60.4
Dinv42584 Davidia involucrata HOM05D001317 ORTHO05D001164 2.2e-06 55.1 51 56.9
Rhsim03G0079200 Rhododendron simsii HOM05D001317 ORTHO05D001164 2.2e-06 55.1 43 67.4
Rhsim03G0079800 Rhododendron simsii HOM05D001317 ORTHO05D001164 2.2e-06 55.1 43 67.4
vmacro07381 Vaccinium macrocarpon HOM05D001317 ORTHO05D001164 2.2e-06 55.1 43 67.4
AL5G33680 Arabidopsis lyrata HOM05D001317 ORTHO05D001164 2.9e-06 54.7 61 57.4
MELO3C004756.2 Cucumis melo HOM05D001317 ORTHO05D001164 2.9e-06 54.7 52 57.7
A09p45960 Brassica napus HOM05D000146 ORTHO05D000178 3.8e-06 54.3 53 58.5
BolC8t50428H Brassica oleracea HOM05D000146 ORTHO05D000178 3.8e-06 54.3 47 66.0
BraA09t40057Z Brassica rapa HOM05D000146 ORTHO05D000178 3.8e-06 54.3 53 58.5
Thhalv10010763m.g Eutrema salsugineum HOM05D001317 ORTHO05D001164 3.8e-06 54.3 47 66.0
Gohir.D09G137100 Gossypium hirsutum HOM05D001317 ORTHO05D001164 3.8e-06 54.3 43 65.1
Sp5g09440 Schrenkiella parvula HOM05D001317 ORTHO05D001164 3.8e-06 54.3 47 66.0
AT3G52900 Arabidopsis thaliana HOM05D001317 ORTHO05D001164 5.0e-06 53.9 53 58.5
A07p21270 Brassica napus HOM05D001317 ORTHO05D001164 5.0e-06 53.9 53 58.5
Manes.10G057100 Manihot esculenta HOM05D001317 ORTHO05D001164 5.0e-06 53.9 59 52.5
BcaB02g07804 Brassica carinata HOM05D001317 ORTHO05D001164 6.5e-06 53.5 54 55.6
CAN.G534.17 Capsicum annuum HOM05D001317 ORTHO05D001164 6.5e-06 53.5 43 69.8
ClCG01G012520 Citrullus lanatus HOM05D001317 ORTHO05D001164 6.5e-06 53.5 50 58.0
vmacro03287 Vaccinium macrocarpon HOM05D001317 ORTHO05D001164 6.5e-06 53.5 50 60.0
Carub.0004s0849 Capsella rubella HOM05D001317 ORTHO05D001164 8.5e-06 53.1 57 52.6
COL.COLO4_29798 Corchorus olitorius HOM05D001317 ORTHO05D001164 8.5e-06 53.1 43 62.8
CsaV3_1G014610 Cucumis sativus L. HOM05D001317 ORTHO05D001164 8.5e-06 53.1 50 58.0
Duzib106G1466 Durio zibethinus HOM05D001317 ORTHO05D001164 8.5e-06 53.1 43 62.8
Gohir.A09G137500 Gossypium hirsutum HOM05D001317 ORTHO05D001164 8.5e-06 53.1 43 62.8
Gohir.D01G197400 Gossypium hirsutum HOM05D001317 ORTHO05D001164 8.5e-06 53.1 43 62.8
Gorai.002G241500 Gossypium raimondii HOM05D001317 ORTHO05D001164 8.5e-06 53.1 43 62.8
Gorai.006G157400 Gossypium raimondii HOM05D001317 ORTHO05D001164 8.5e-06 53.1 43 62.8
Thecc.05G083200 Theobroma cacao HOM05D001317 ORTHO05D001164 8.5e-06 53.1 43 62.8


User provided reference genes

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