Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.7e-188 662.5 335 100.0
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 4.3e-83 312.4 262 69.5
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 1.6e-66 257.3 227 64.8
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 5.4e-62 242.3 212 65.1
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.9e-31 140.2 350 35.1
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 8.7e-28 128.6 347 34.0
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.3e-26 124.8 325 33.2
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.8e-25 120.9 323 34.1
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 2.4e-25 120.6 322 32.6
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 5.3e-25 119.4 330 32.7
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 9.0e-25 118.6 319 34.5
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 2.6e-24 117.1 332 34.0
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 2.2e-23 114.0 325 31.4
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.1e-22 111.7 312 34.3
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 5.5e-22 109.4 329 30.7
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 7.2e-22 109.0 283 33.9
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 7.2e-22 109.0 290 33.1
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 9.4e-22 108.6 302 32.5
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 2.7e-21 107.1 305 31.8
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 3.6e-21 106.7 186 40.9
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 4.6e-21 106.3 338 31.7
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 6.1e-21 105.9 328 33.2
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 7.9e-21 105.5 292 36.0
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.8e-20 104.4 278 34.2
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 1.8e-20 104.4 326 31.3
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.8e-20 104.4 328 31.1
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 2.3e-20 104.0 320 31.2
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.0e-20 103.6 331 31.1
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 3.0e-20 103.6 281 34.5
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 3.0e-20 103.6 305 33.4
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.9e-20 103.2 330 30.6
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 6.7e-20 102.4 325 29.8
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.9e-19 100.9 330 30.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 3.3e-19 100.1 319 31.7
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 3.3e-19 100.1 311 30.9
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 3.3e-19 100.1 341 29.3
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.3e-19 100.1 328 31.7
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.7e-18 97.8 321 31.2
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.7e-18 96.7 346 31.5
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 6.3e-18 95.9 344 30.5
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.4e-17 94.7 311 31.5
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 6.9e-17 92.4 270 28.9
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 6.9e-17 92.4 321 31.5
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 6.9e-17 92.4 213 35.2
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 9.1e-17 92.0 207 35.7
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 9.1e-17 92.0 282 31.9
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 2.6e-16 90.5 297 31.3
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.3e-15 88.2 324 27.8
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 2.2e-15 87.4 267 31.1
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.0e-15 86.3 299 31.4
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.0e-15 86.3 299 31.4
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 1.4e-14 84.7 289 30.4
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.2e-13 81.6 148 39.2
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 2.1e-13 80.9 286 30.1
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.7e-13 80.5 299 31.8
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 3.6e-13 80.1 301 29.6
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 4.7e-13 79.7 267 30.0
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 6.1e-13 79.3 195 34.4
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.1e-13 79.3 284 29.6
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.8e-12 77.8 296 29.7
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 3.0e-12 77.0 286 29.4
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 3.0e-12 77.0 282 28.4
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 5.1e-12 76.3 277 29.6
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 6.7e-12 75.9 282 30.5
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 1.1e-11 75.1 308 28.9
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 2.0e-11 74.3 327 29.1
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.0e-11 74.3 283 27.2
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 2.0e-11 74.3 421 24.5
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 3.3e-11 73.6 281 29.5
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 3.3e-11 73.6 281 29.2
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 4.4e-11 73.2 276 26.8
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 4.4e-11 73.2 276 26.8
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 4.4e-11 73.2 274 29.2
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 5.7e-11 72.8 187 31.6
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 5.7e-11 72.8 187 31.6
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 7.4e-11 72.4 277 28.9
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 7.4e-11 72.4 207 32.9
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 2.2e-10 70.9 282 28.4
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 2.2e-10 70.9 302 29.5
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.2e-10 70.9 289 27.0
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.8e-10 70.5 272 28.3
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 2.8e-10 70.5 316 28.2
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 3.7e-10 70.1 313 27.8
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 3.7e-10 70.1 275 30.2
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.7e-10 70.1 280 28.6
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 4.8e-10 69.7 261 28.4
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 4.8e-10 69.7 275 30.2
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 4.8e-10 69.7 275 27.3
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 4.8e-10 69.7 316 26.6
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 8.2e-10 68.9 274 30.3
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 8.2e-10 68.9 274 30.3
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 8.2e-10 68.9 274 30.3
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 8.2e-10 68.9 81 50.6
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.1e-09 68.6 263 28.5
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.4e-09 68.2 275 26.5
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.8e-09 67.8 125 40.8
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 2.4e-09 67.4 249 27.7
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 3.1e-09 67.0 308 26.6
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 3.1e-09 67.0 309 28.8
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 4.1e-09 66.6 132 37.9
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 5.3e-09 66.2 89 44.9
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 5.3e-09 66.2 89 46.1
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 5.3e-09 66.2 315 25.7
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 9.1e-09 65.5 297 29.3
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.2e-08 65.1 299 27.4
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 5.9e-08 62.8 298 27.9
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 7.7e-08 62.4 290 26.9
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.0e-07 62.0 106 40.6
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 1.0e-07 62.0 285 27.7
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-07 61.2 277 24.5
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.7e-07 61.2 277 24.5
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 1.7e-07 61.2 357 27.5
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 2.9e-07 60.5 287 26.1
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.9e-07 60.5 135 34.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 3.8e-07 60.1 89 41.6
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 3.8e-07 60.1 89 41.6
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 5.0e-07 59.7 291 24.7
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 8.5e-07 58.9 107 40.2
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 8.5e-07 58.9 99 39.4
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 1.1e-06 58.5 284 26.1
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.4e-06 58.2 96 40.6
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.9e-06 57.8 301 25.9
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 2.5e-06 57.4 116 36.2
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 3.2e-06 57.0 77 42.9
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 4.2e-06 56.6 277 23.8
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 5.5e-06 56.2 295 26.8
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 5.5e-06 56.2 94 41.5
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 7.2e-06 55.8 280 27.5
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 9.4e-06 55.5 283 23.3


User provided reference genes

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