Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.2e-71 273.1 136 100.0
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 3.0e-43 178.7 137 71.5
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 3.1e-40 168.7 136 68.4
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.5e-39 166.4 137 65.7
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-38 162.2 137 63.5
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.6e-33 146.4 137 56.9
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 2.6e-31 139.0 140 51.4
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.7e-28 129.0 136 51.5
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 6.0e-28 127.9 136 48.5
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 6.0e-28 127.9 137 48.9
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 7.9e-28 127.5 136 50.0
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 7.9e-28 127.5 137 48.9
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 1.0e-27 127.1 137 51.1
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.8e-27 126.3 183 44.8
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 3.0e-27 125.6 137 49.6
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 3.9e-27 125.2 136 51.5
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.1e-27 124.8 136 49.3
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 8.7e-27 124.0 136 49.3
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.1e-26 123.6 137 48.9
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.5e-26 123.2 136 49.3
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 1.5e-26 123.2 138 47.1
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.9e-26 122.9 137 48.9
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.9e-26 122.9 126 54.0
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.3e-26 122.1 136 48.5
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 4.3e-26 121.7 136 48.5
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 4.3e-26 121.7 136 50.0
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 7.4e-26 120.9 137 48.9
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.3e-25 120.2 155 44.5
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 1.3e-25 120.2 137 47.4
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.3e-25 120.2 142 50.0
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.3e-25 120.2 136 47.8
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.6e-25 119.8 137 48.9
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 1.6e-25 119.8 137 48.9
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.6e-25 119.8 137 48.9
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 2.8e-25 119.0 136 49.3
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 2.8e-25 119.0 136 47.8
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 4.8e-25 118.2 137 47.4
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 1.4e-24 116.7 136 47.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.4e-24 115.9 137 43.8
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 5.3e-24 114.8 140 45.7
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 6.9e-24 114.4 140 48.6
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 9.0e-24 114.0 137 46.7
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 9.0e-24 114.0 144 44.4
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 1.2e-23 113.6 142 47.9
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.0e-23 112.8 139 46.8
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 2.0e-23 112.8 136 44.1
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.0e-23 112.8 136 44.1
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 4.5e-23 111.7 140 47.1
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 5.9e-23 111.3 137 44.5
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 5.9e-23 111.3 137 46.7
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 5.9e-23 111.3 140 47.1
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 7.6e-23 110.9 140 46.4
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 7.6e-23 110.9 137 46.0
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.0e-22 110.5 136 43.4
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.0e-22 110.5 140 45.0
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.0e-22 110.5 140 45.0
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-22 110.2 137 43.8
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-22 110.2 137 43.8
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-22 110.2 137 43.8
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.3e-22 110.2 137 43.1
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 1.3e-22 110.2 137 43.1
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.3e-22 110.2 139 47.5
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.7e-22 109.8 142 45.1
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.7e-22 109.8 183 38.8
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 2.9e-22 109.0 143 44.1
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.9e-22 109.0 139 43.2
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 5.0e-22 108.2 144 43.1
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 6.5e-22 107.8 137 43.8
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 6.5e-22 107.8 139 43.2
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 8.5e-22 107.5 137 43.1
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 8.5e-22 107.5 136 42.6
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.1e-21 107.1 139 42.4
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.1e-21 107.1 140 44.3
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.9e-21 106.3 183 38.3
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.9e-21 106.3 183 38.3
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.5e-21 105.9 183 38.3
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 4.2e-21 105.1 136 42.6
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 7.2e-21 104.4 133 45.1
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.2e-21 104.4 183 37.7
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 7.2e-21 104.4 144 41.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 9.4e-21 104.0 105 51.4
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 9.4e-21 104.0 138 42.8
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 9.4e-21 104.0 183 37.7
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 9.4e-21 104.0 183 37.7
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 2.1e-20 102.8 137 40.9
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 2.7e-20 102.4 137 39.4
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.6e-20 102.1 133 46.6
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 3.6e-20 102.1 136 44.9
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 6.1e-20 101.3 137 46.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.4e-19 100.1 133 42.1
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 5.1e-19 98.2 184 33.7
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 8.8e-19 97.4 175 34.3
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 1.5e-18 96.7 193 35.2
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 5.7e-18 94.7 175 33.7
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 7.4e-18 94.4 137 41.6
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 9.7e-18 94.0 138 42.8
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 1.3e-17 93.6 141 39.7
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.7e-17 93.2 61 68.9
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.7e-17 93.2 141 38.3
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 2.2e-17 92.8 135 41.5
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.8e-17 92.4 146 39.7
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 3.7e-17 92.0 136 41.9
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 4.8e-17 91.7 148 39.9
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 4.8e-17 91.7 184 31.5
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 6.3e-17 91.3 78 57.7
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 6.3e-17 91.3 138 41.3
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.1e-16 90.5 136 39.0
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.4e-16 90.1 121 44.6
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.9e-16 87.8 147 38.1
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 9.1e-16 87.4 61 68.9
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.5e-15 86.7 137 39.4
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.0e-15 86.3 137 37.2
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 2.0e-15 86.3 140 40.7
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 4.5e-15 85.1 102 47.1
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 4.5e-15 85.1 137 39.4
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.3e-14 83.6 161 31.7
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.2e-14 82.8 132 36.4
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.9e-14 82.4 134 36.6
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 2.9e-14 82.4 137 36.5
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.8e-14 82.0 139 36.0
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 5.0e-14 81.6 145 32.4
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 8.5e-14 80.9 137 39.4
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 1.1e-13 80.5 137 36.5
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-13 80.5 137 36.5
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-13 80.5 137 36.5
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 1.1e-13 80.5 137 36.5
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.1e-13 80.5 61 60.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 2.5e-13 79.3 134 38.1
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 3.2e-13 79.0 137 35.8
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 3.2e-13 79.0 102 44.1
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 5.5e-13 78.2 129 37.2
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 7.2e-13 77.8 135 36.3
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 9.4e-13 77.4 134 37.3
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.2e-12 77.0 134 36.6
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.6e-12 76.6 156 34.0
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 3.6e-12 75.5 129 36.4
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 1.0e-11 73.9 136 34.6
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 3.0e-11 72.4 130 38.5
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 3.0e-11 72.4 156 35.3
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 5.1e-11 71.6 133 33.1
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.1e-10 70.5 138 34.1
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.6e-10 69.3 127 35.4
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 4.4e-10 68.6 155 29.0
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 9.7e-10 67.4 128 31.2
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 9.7e-10 67.4 156 32.7
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.7e-09 65.5 138 32.6
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 6.3e-09 64.7 118 33.9
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 8.2e-09 64.3 156 31.4
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 8.2e-09 64.3 156 31.4
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.4e-08 63.5 135 37.0
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 2.4e-08 62.8 137 32.1
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-08 62.8 137 32.1
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-07 60.5 84 42.9
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 5.9e-07 58.2 132 31.8
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 7.7e-07 57.8 133 29.3
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 1.0e-06 57.4 145 26.9
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.3e-06 57.0 42 61.9
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 2.9e-06 55.8 41 63.4
HanXRQChr10g0278651 Helianthus annuus HOM05D000883 ORTHO05D003260 3.8e-06 55.5 27 92.6
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 6.5e-06 54.7 156 28.2
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 8.5e-06 54.3 53 49.1


User provided reference genes

Program Settings