Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 2.8e-38 161.4 78 100.0
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 3.7e-30 134.4 64 98.4
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 2.4e-29 131.7 71 85.9
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 2.5e-26 121.7 64 87.5
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.2e-25 119.4 66 81.8
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 4.7e-25 117.5 63 82.5
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 4.7e-25 117.5 66 78.8
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 4.7e-25 117.5 66 78.8
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 6.1e-25 117.1 66 77.3
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 8.0e-25 116.7 64 79.7
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 8.0e-25 116.7 64 82.8
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 8.0e-25 116.7 64 76.6
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 1.0e-24 116.3 63 82.5
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 1.4e-24 115.9 63 82.5
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 1.8e-24 115.5 64 78.1
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 2.3e-24 115.2 64 79.7
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 3.0e-24 114.8 65 76.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 5.2e-24 114.0 64 78.1
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 6.8e-24 113.6 63 77.8
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 6.8e-24 113.6 63 77.8
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 8.8e-24 113.2 63 77.8
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 8.8e-24 113.2 63 79.4
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 1.2e-23 112.8 65 75.4
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 1.5e-23 112.5 63 79.4
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 1.5e-23 112.5 66 75.8
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.5e-23 112.5 66 75.8
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.5e-23 112.5 63 81.0
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.0e-23 112.1 66 75.8
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.6e-23 111.7 64 78.1
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 2.6e-23 111.7 64 78.1
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 2.6e-23 111.7 64 78.1
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 3.4e-23 111.3 63 77.8
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 3.4e-23 111.3 63 77.8
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.4e-23 111.3 64 76.6
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 4.4e-23 110.9 63 74.6
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 4.4e-23 110.9 66 74.2
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 5.7e-23 110.5 63 77.8
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 5.7e-23 110.5 63 74.6
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 7.5e-23 110.2 66 71.2
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 7.5e-23 110.2 66 74.2
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 7.5e-23 110.2 63 76.2
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 9.8e-23 109.8 63 77.8
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 9.8e-23 109.8 63 77.8
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 9.8e-23 109.8 63 76.2
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 1.3e-22 109.4 63 76.2
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 1.3e-22 109.4 63 76.2
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 1.3e-22 109.4 65 73.8
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 1.3e-22 109.4 63 77.8
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.7e-22 109.0 63 76.2
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 2.2e-22 108.6 63 73.0
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 2.2e-22 108.6 63 74.6
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 2.2e-22 108.6 63 76.2
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 2.8e-22 108.2 63 74.6
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 3.7e-22 107.8 63 74.6
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 3.7e-22 107.8 63 74.6
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 3.7e-22 107.8 75 69.3
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 4.9e-22 107.5 72 66.7
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 4.9e-22 107.5 63 71.4
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 4.9e-22 107.5 63 73.0
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 4.9e-22 107.5 63 71.4
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 4.9e-22 107.5 63 71.4
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 6.3e-22 107.1 64 71.9
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 6.3e-22 107.1 63 73.0
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 6.3e-22 107.1 63 74.6
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 6.3e-22 107.1 64 71.9
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 8.3e-22 106.7 63 74.6
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 8.3e-22 106.7 63 74.6
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 8.3e-22 106.7 63 74.6
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 8.3e-22 106.7 66 71.2
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 8.3e-22 106.7 64 70.3
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.1e-21 106.3 63 74.6
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 1.1e-21 106.3 63 74.6
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.1e-21 106.3 66 68.2
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 1.4e-21 105.9 63 71.4
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.4e-21 105.9 63 73.0
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 1.4e-21 105.9 66 69.7
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 1.8e-21 105.5 63 69.8
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 2.4e-21 105.1 63 71.4
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 2.4e-21 105.1 66 68.2
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 2.4e-21 105.1 64 71.9
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 2.4e-21 105.1 63 71.4
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 3.1e-21 104.8 63 69.8
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 3.1e-21 104.8 63 69.8
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 5.4e-21 104.0 63 69.8
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 5.4e-21 104.0 66 68.2
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 7.0e-21 103.6 63 73.0
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 7.0e-21 103.6 63 71.4
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 9.1e-21 103.2 61 75.4
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 1.2e-20 102.8 63 71.4
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.0e-19 99.8 56 80.4
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.3e-19 98.6 62 67.7
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 2.5e-18 95.1 66 60.6
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 7.2e-18 93.6 64 64.1
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 1.6e-17 92.4 66 59.1
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 8.0e-17 90.1 63 66.7
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 2.6e-15 85.1 63 55.6
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.2e-14 82.0 44 79.5
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 1.1e-13 79.7 47 78.7
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 2.0e-12 75.5 47 74.5
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 2.0e-12 75.5 47 74.5
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 2.7e-12 75.1 68 45.6
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 1.1e-10 69.7 45 71.1
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 4.3e-10 67.8 67 43.3
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 4.3e-10 67.8 44 63.6
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 1.4e-08 62.8 82 35.4
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 9.8e-07 56.6 51 52.9


User provided reference genes

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