Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 4108.9 2144 100.0
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 3087.4 2156 75.0
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 3042.3 2160 73.8
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 2337.0 2178 57.9
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2327.0 2180 57.7
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2256.1 2180 56.6
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 2248.4 2198 56.0
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 2241.8 2188 55.3
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 2229.9 2184 55.4
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2218.0 2175 54.9
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 2206.0 2277 54.6
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2194.5 2178 55.0
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 2174.4 2174 54.8
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 2150.6 2157 55.2
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 2129.4 2170 53.1
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 2108.6 2221 52.5
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 2097.0 2178 51.9
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 2088.5 2173 53.2
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 2077.4 2197 52.2
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 2076.6 2217 52.5
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 2074.7 2171 52.0
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2072.4 2178 52.4
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 2060.0 2177 51.6
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 2057.3 2177 51.6
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2043.9 2175 51.7
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 2041.5 2184 51.2
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 2032.3 2177 50.8
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 2023.4 2178 51.2
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 2023.1 2170 51.3
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 2015.4 2177 51.0
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1998.8 2168 50.8
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 1998.4 2201 50.1
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1997.6 2221 50.3
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1994.9 2201 50.0
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1991.1 2302 49.5
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1984.1 2171 50.6
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1966.4 2178 49.5
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1964.5 2174 50.0
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1964.5 2172 50.4
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1959.9 2176 50.0
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1956.0 2178 49.6
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1948.7 2176 50.5
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1942.9 2181 49.7
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1935.6 2167 49.7
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1931.4 2175 49.2
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1927.5 2172 50.0
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1925.2 2169 49.0
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1915.6 2199 48.9
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1908.6 2186 49.3
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1907.9 2172 49.1
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1904.8 2290 47.6
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1904.4 2177 48.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1900.9 2157 49.6
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1899.8 2173 48.4
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1897.5 2170 48.9
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1878.2 2178 48.5
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1870.1 2188 49.0
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1869.7 2169 48.7
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1858.6 2188 48.1
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1850.1 2241 46.4
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1844.7 2188 47.8
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1844.3 2201 48.3
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1837.4 2201 47.9
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1831.2 1970 51.5
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1823.1 2202 47.7
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1773.4 2241 45.0
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1772.7 2245 45.2
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1770.7 2251 45.1
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1754.2 2248 45.1
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1750.3 2164 47.1
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1739.9 2244 45.5
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1734.9 2248 45.1
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1732.6 2242 44.4
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1718.0 2174 47.3
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1708.7 2244 44.2
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1692.9 2250 43.8
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1677.5 2244 43.5
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1656.0 1954 47.2
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1617.8 2206 44.6
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1586.2 1907 47.0
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1570.4 2324 41.4
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1524.6 2181 41.0
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1465.3 1807 47.1
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1463.0 2183 40.8
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1456.4 1763 47.5
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1403.3 1864 44.9
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1393.3 1433 54.2
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1377.5 1535 50.1
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1352.8 1384 54.0
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 1304.3 1476 49.7
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1291.9 1702 44.7
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1270.0 1844 41.3
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1269.6 1850 41.2
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1266.9 1851 41.4
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1260.0 1849 41.2
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1254.2 1850 41.0
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 0.0e+00 1248.4 2184 37.8
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.9e-311 1073.2 1060 56.0
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 4.5e-303 1045.8 1175 48.6
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.1e-272 944.9 984 54.3
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 7.5e-266 922.2 2228 31.2
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 4.1e-256 889.8 1207 43.2
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 6.6e-254 882.5 2214 31.6
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.3e-249 868.2 1436 39.1
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 3.3e-229 800.4 2176 29.4
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.8e-228 796.6 802 54.6
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 6.2e-228 796.2 1162 41.7
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 9.0e-227 792.3 724 59.0
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 1.9e-213 748.0 2103 28.4
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 8.2e-212 742.7 2325 27.7
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.5e-209 733.0 847 49.4
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.5e-202 710.3 847 49.7
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 8.8e-198 696.0 833 46.2
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 4.5e-186 657.1 641 54.1
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 6.5e-185 653.3 635 57.6
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.3e-180 636.3 799 48.9
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 1.2e-178 632.5 631 53.9
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 8.0e-159 566.6 500 58.6
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 6.6e-145 520.4 565 52.4
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.6e-137 493.8 693 44.2
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.3e-127 463.0 400 59.2
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 2.7e-122 445.3 360 62.5
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 7.6e-117 427.2 391 55.5
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.3e-116 426.4 645 40.2
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 8.4e-116 423.7 629 41.0
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 4.3e-112 411.4 863 33.4
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.1e-111 409.1 603 43.0
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.5e-109 402.9 311 65.6
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.3e-108 399.8 760 35.8
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 3.2e-107 395.2 481 50.3
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.1e-98 365.9 405 53.3
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 8.2e-95 354.0 380 51.6
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-86 326.2 506 41.7
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.8e-79 302.4 264 61.0
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.0e-78 297.7 391 46.0
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 9.1e-78 297.4 306 52.9
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 7.4e-72 277.7 382 41.6
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.3e-71 276.9 199 69.3
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 2.2e-68 266.2 232 61.6
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 1.5e-64 253.4 2587 20.0
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 1.5e-64 253.4 364 45.3
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 2.6e-64 252.7 220 60.9
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.3e-63 248.1 343 44.3
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 3.2e-59 235.7 609 30.7
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 1.0e-57 230.7 223 56.1
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 1.0e-57 230.7 223 56.1
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 3.0e-57 229.2 313 41.9
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 2.3e-52 213.0 275 43.6
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 3.4e-48 199.1 127 78.7
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 3.4e-48 199.1 397 35.3
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 8.3e-47 194.5 609 27.8
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 1.9e-43 183.3 145 65.5
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 2.5e-43 183.0 114 82.5
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 2.0e-40 173.3 229 44.5
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.1e-34 151.4 94 83.0
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 2.6e-32 146.4 170 48.2
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.2e-31 143.3 213 41.3
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 4.9e-31 142.1 229 39.7
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 2.1e-29 136.7 239 33.9
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.3e-28 133.3 182 42.3
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 3.0e-28 132.9 182 41.8
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 9.6e-19 101.3 177 38.4
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 2.1e-18 100.1 179 36.3
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 4.0e-17 95.9 412 22.8
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 6.8e-17 95.1 203 36.0
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 6.4e-15 88.6 912 19.2
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 6.4e-15 88.6 129 38.8
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 1.9e-14 87.0 48 77.1
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 3.2e-14 86.3 86 53.5
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 1.2e-13 84.3 75 56.0
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 1.1e-11 77.8 58 69.0
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 2.5e-11 76.6 55 70.9
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 3.3e-11 76.3 309 26.5
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.1e-09 71.2 54 63.0
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 1.5e-08 67.4 39 74.4
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.0e-08 67.0 39 74.4
BolC5t34134H Brassica oleracea HOM05D003586 ORTHO05D004036 1.3e-07 64.3 88 39.8
Ca_11520_v3 Cicer arietinum L. HOM05D003586 ORTHO05D009105 1.7e-07 63.9 43 62.8
Lsat_1_v5_gn_9_1361 Lactuca sativa HOM05D000942 ORTHO05D014905 1.7e-07 63.9 51 68.6
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 3.8e-07 62.8 139 33.1
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 7.1e-06 58.5 87 34.5


User provided reference genes

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