Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138221 Helianthus annuus HOM05D003498 ORTHO05D004191 3.9e-104 381.7 226 100.0
HanXRQChr05g0142761 Helianthus annuus HOM05D003498 ORTHO05D004191 3.9e-104 381.7 226 100.0
HanXRQChr14g0450941 Helianthus annuus HOM05D003498 ORTHO05D004191 6.7e-56 221.5 120 93.3
ECA238G3044 Erigeron canadensis HOM05D003498 ORTHO05D004191 2.8e-46 189.5 124 76.6
Lsat_1_v5_gn_2_93800 Lactuca sativa HOM05D003498 ORTHO05D004191 5.3e-45 185.3 124 75.8
Lsat_1_v5_gn_2_32401 Lactuca sativa HOM05D003498 ORTHO05D004191 1.1e-42 177.6 121 76.0
Hma1.2p1_0279F.1_g112380 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 1.9e-42 176.8 124 71.8
Lj7A607T30 Lonicera japonica HOM05D003498 ORTHO05D004191 9.4e-42 174.5 119 72.3
Rhsim10G0009900 Rhododendron simsii HOM05D003498 ORTHO05D004191 2.7e-41 172.9 124 67.7
CSS0002226 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 3.9e-40 169.1 120 70.8
CSS0027983 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 6.7e-40 168.3 121 69.4
Rhsim08G0045600 Rhododendron simsii HOM05D003498 ORTHO05D004191 1.5e-39 167.2 118 70.3
Dinv33373 Davidia involucrata HOM05D003498 ORTHO05D004191 3.3e-39 166.0 115 71.3
CSS0006967 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 9.7e-39 164.5 121 67.8
Actinidia18419 Actinidia chinensis HOM05D003498 ORTHO05D004191 6.3e-38 161.8 125 65.6
Actinidia05930 Actinidia chinensis HOM05D003498 ORTHO05D004191 2.4e-37 159.8 94 83.0
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 2.4e-37 159.8 133 65.4
Gorai.007G185700 Gossypium raimondii HOM05D003498 ORTHO05D004191 5.3e-37 158.7 129 64.3
CSS0030890 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 6.9e-37 158.3 123 65.0
Gohir.A11G167100 Gossypium hirsutum HOM05D003498 ORTHO05D004191 9.1e-37 157.9 129 63.6
Gohir.D11G173400 Gossypium hirsutum HOM05D003498 ORTHO05D004191 9.1e-37 157.9 129 64.3
Haze_21315 Corylus avellana HOM05D003498 ORTHO05D004191 1.2e-36 157.5 135 64.4
CSS0032491 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.6e-36 156.4 94 81.9
TAR622G0600 Trochodendron aralioides HOM05D003498 ORTHO05D004191 2.6e-36 156.4 122 66.4
Thecc.04G123800 Theobroma cacao HOM05D003498 ORTHO05D004191 5.9e-36 155.2 134 64.2
vmacro05933 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 1.7e-35 153.7 94 79.8
Duzib138G0533 Durio zibethinus HOM05D003498 ORTHO05D004191 5.0e-35 152.1 127 63.8
Migut.K01441 Erythranthe guttata HOM05D003498 ORTHO05D004191 5.0e-35 152.1 108 70.4
GSVIVG01001834001 Vitis vinifera HOM05D003498 ORTHO05D004191 5.0e-35 152.1 124 65.3
vmacro18322 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 6.5e-35 151.8 125 63.2
Nitab4.5_0000441g0220 Nicotiana tabacum HOM05D003498 ORTHO05D004191 8.5e-35 151.4 98 76.5
Manes.14G169300 Manihot esculenta HOM05D003498 ORTHO05D004191 1.4e-34 150.6 133 59.4
TAR374G1609 Trochodendron aralioides HOM05D003498 ORTHO05D004191 1.9e-34 150.2 118 66.9
Ciclev10016330m.g Citrus clementina HOM05D003498 ORTHO05D004191 3.2e-34 149.4 130 63.1
Peaxi162Scf00776g00325 Petunia axillaris HOM05D003498 ORTHO05D004191 3.2e-34 149.4 114 68.4
ATR1120G052 Amborella trichopoda HOM05D003498 ORTHO05D004191 4.2e-34 149.1 109 71.6
Eucgr.A01374 Eucalyptus grandis HOM05D003498 ORTHO05D004191 4.2e-34 149.1 129 63.6
Aqoxy7G03334 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 5.5e-34 148.7 105 69.5
Solyc07g048010.4 Solanum lycopersicum HOM05D003498 ORTHO05D004191 5.5e-34 148.7 122 66.4
ClCG07G012360 Citrullus lanatus HOM05D003498 ORTHO05D004191 7.2e-34 148.3 129 60.5
Lalb_Chr10g0095001 Lupinus albus HOM05D003498 ORTHO05D004191 7.2e-34 148.3 131 61.1
TWI36G0082 Tripterygium wilfordii HOM05D003498 ORTHO05D004191 7.2e-34 148.3 124 65.3
Sed0009078 Sechium edule HOM05D003498 ORTHO05D004191 9.4e-34 147.9 129 61.2
Sopen07g024440 Solanum pennellii HOM05D003498 ORTHO05D004191 9.4e-34 147.9 117 68.4
PGR083G2492 Punica granatum HOM05D003498 ORTHO05D004191 1.2e-33 147.5 112 69.6
Duzib133G0132 Durio zibethinus HOM05D003498 ORTHO05D004191 1.6e-33 147.1 133 59.4
Nitab4.5_0002877g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 1.6e-33 147.1 122 64.8
Aqoxy3G02772 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 2.1e-33 146.7 106 67.9
MSTRG.15556 Avicennia marina HOM05D003498 ORTHO05D004191 2.1e-33 146.7 114 65.8
Manes.14G170700 Manihot esculenta HOM05D003498 ORTHO05D004191 2.1e-33 146.7 129 60.5
Nn3g16542 Nelumbo nucifera HOM05D003498 ORTHO05D004191 2.1e-33 146.7 122 63.1
Nitab4.5_0005699g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 2.1e-33 146.7 122 66.4
CANSAT56G0570 Cannabis sativa HOM05D003498 ORTHO05D004191 4.7e-33 145.6 132 60.6
Nitab4.5_0011275g0010 Nicotiana tabacum HOM05D003498 ORTHO05D004191 4.7e-33 145.6 122 63.9
MELO3C017855.2 Cucumis melo HOM05D003498 ORTHO05D004191 6.1e-33 145.2 129 60.5
CAN.G1461.1 Capsicum annuum HOM05D003498 ORTHO05D004191 7.9e-33 144.8 121 65.3
CsaV3_4G001780 Cucumis sativus L. HOM05D003498 ORTHO05D004191 7.9e-33 144.8 129 60.5
Oeu001847.2 Olea europaea HOM05D003498 ORTHO05D004191 7.9e-33 144.8 94 76.6
PSO675G6488 Papaver somniferum HOM05D003498 ORTHO05D004191 7.9e-33 144.8 124 61.3
QL02p008646 Quercus lobata HOM05D003498 ORTHO05D004191 7.9e-33 144.8 139 57.6
Cc07_g00530 Coffea canephora HOM05D003498 ORTHO05D004191 1.0e-32 144.4 125 64.0
FAN14G2218 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.0e-32 144.4 130 59.2
Gohir.A07G076000 Gossypium hirsutum HOM05D003498 ORTHO05D004191 1.0e-32 144.4 124 62.9
MBI11_g00914_MAGBIO Magnolia biondii HOM05D003498 ORTHO05D004191 1.0e-32 144.4 121 62.8
PSO170G3520 Papaver somniferum HOM05D003498 ORTHO05D004191 1.0e-32 144.4 125 61.6
PSO541G3815 Papaver somniferum HOM05D003498 ORTHO05D004191 1.0e-32 144.4 125 60.8
Cpa.g.sc802.1 Carica papaya HOM05D003498 ORTHO05D004191 1.4e-32 144.1 127 60.6
AL8G35910 Arabidopsis lyrata HOM05D003498 ORTHO05D004191 1.8e-32 143.7 129 62.0
MD17G1016300 Malus domestica HOM05D003498 ORTHO05D004191 1.8e-32 143.7 128 61.7
VMungo1080G1345 Vigna mungo HOM05D003498 ORTHO05D004191 1.8e-32 143.7 127 62.2
CiPaw.08G003000 Carya illinoinensis HOM05D003498 ORTHO05D004191 2.3e-32 143.3 123 61.8
Cc06_g23000 Coffea canephora HOM05D003498 ORTHO05D004191 2.3e-32 143.3 139 60.4
FAN09G1233 Fragaria x ananassa HOM05D003498 ORTHO05D004191 2.3e-32 143.3 134 57.5
Gorai.001G085600 Gossypium raimondii HOM05D003498 ORTHO05D004191 2.3e-32 143.3 157 54.8
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 2.3e-32 143.3 89 78.7
FAN05G5642 Fragaria x ananassa HOM05D003498 ORTHO05D004191 3.0e-32 142.9 130 58.5
FvH4_6g52930 Fragaria vesca HOM05D003498 ORTHO05D004191 3.9e-32 142.5 130 58.5
PSO210G3977 Papaver somniferum HOM05D003498 ORTHO05D004191 3.9e-32 142.5 125 60.8
Carub.0008s2011 Capsella rubella HOM05D003498 ORTHO05D004191 5.1e-32 142.1 127 62.2
Aa31LG1G11800 Aethionema arabicum HOM05D003498 ORTHO05D004191 6.7e-32 141.7 138 56.5
Potri.001G334900 Populus trichocarpa HOM05D003498 ORTHO05D004191 6.7e-32 141.7 129 61.2
Atru.chr10.1225 Acer truncatum HOM05D003498 ORTHO05D004191 8.8e-32 141.4 128 63.3
Gohir.D07G080500 Gossypium hirsutum HOM05D003498 ORTHO05D004191 8.8e-32 141.4 89 75.3
AT5G59440 Arabidopsis thaliana HOM05D003498 ORTHO05D004191 1.5e-31 140.6 85 78.8
CARHR285810 Cardamine hirsuta HOM05D003498 ORTHO05D004191 1.5e-31 140.6 120 60.8
Medtr0274s0020 Medicago truncatula HOM05D003498 ORTHO05D004191 1.5e-31 140.6 130 60.0
Glyma.13G277200 Glycine max HOM05D003498 ORTHO05D004191 2.0e-31 140.2 127 59.8
Medtr1g092440 Medicago truncatula HOM05D000397 ORTHO05D004191 2.0e-31 140.2 130 60.0
arahy.Tifrunner.gnm1.ann1.C6G3CE Arachis hypogaea HOM05D003498 ORTHO05D004191 2.6e-31 139.8 129 58.9
FAN02G3013 Fragaria x ananassa HOM05D003498 ORTHO05D004191 2.6e-31 139.8 130 56.9
arahy.Tifrunner.gnm1.ann1.IHQ30F Arachis hypogaea HOM05D003498 ORTHO05D004191 3.3e-31 139.4 128 59.4
arahy.Tifrunner.gnm1.ann1.MGT28Z Arachis hypogaea HOM05D003498 ORTHO05D004191 3.3e-31 139.4 128 59.4
Lj1g0028146 Lotus japonicus HOM05D003498 ORTHO05D004191 3.3e-31 139.4 120 62.5
SGA_v2.0_scaffold47G17560 Striga asiatica HOM05D003498 ORTHO05D004191 4.4e-31 139.0 132 55.3
Ca_01840_v3 Cicer arietinum L. HOM05D003498 ORTHO05D004191 5.7e-31 138.7 90 77.8
Peaxi162Scf00147g01820 Petunia axillaris HOM05D003498 ORTHO05D004191 5.7e-31 138.7 121 62.8
PGR083G1382 Punica granatum HOM05D003498 ORTHO05D004191 5.7e-31 138.7 131 58.8
Sabra16G0216000 Salix brachista HOM05D003498 ORTHO05D004191 5.7e-31 138.7 128 60.9
PGSC0003DMG400006157 Solanum tuberosum HOM05D003498 ORTHO05D004191 5.7e-31 138.7 131 61.1
HanXRQChr14g0428161 Helianthus annuus HOM05D003498 ORTHO05D004191 7.4e-31 138.3 224 48.2
Oeu001405.1 Olea europaea HOM05D003498 ORTHO05D004191 7.4e-31 138.3 94 73.4
Thhalv10014606m.g Eutrema salsugineum HOM05D003498 ORTHO05D004191 9.7e-31 137.9 88 73.9
Prupe.3G301400 Prunus persica HOM05D003498 ORTHO05D004191 9.7e-31 137.9 102 69.6
CiPaw.07G235500 Carya illinoinensis HOM05D003498 ORTHO05D004191 1.3e-30 137.5 101 68.3
Prupe.3G071800 Prunus persica HOM05D003498 ORTHO05D004191 1.3e-30 137.5 102 69.6
QL02p026417 Quercus lobata HOM05D003498 ORTHO05D004191 1.3e-30 137.5 125 60.8
Sp6g21120 Schrenkiella parvula HOM05D003498 ORTHO05D004191 1.7e-30 137.1 126 64.3
TPR.G38988 Trifolium pratense HOM05D003498 ORTHO05D004191 1.7e-30 137.1 127 59.8
Zm00001eb109870 Zea mays HOM05D003498 ORTHO05D004191 1.7e-30 137.1 123 57.7
THA.LOC104810770 Tarenaya hassleriana HOM05D003498 ORTHO05D004191 2.2e-30 136.7 128 59.4
Atru.chr6.2501 Acer truncatum HOM05D003498 ORTHO05D004191 2.8e-30 136.3 89 74.2
arahy.Tifrunner.gnm1.ann1.82NANE Arachis hypogaea HOM05D003498 ORTHO05D004191 4.8e-30 135.6 129 57.4
Hund09045 Selenicereus undatus HOM05D003498 ORTHO05D004191 4.8e-30 135.6 111 61.3
Os07g0639900 Oryza sativa ssp. japonica HOM05D003498 ORTHO05D004191 6.3e-30 135.2 103 65.0
Lj5g0005525 Lotus japonicus HOM05D003498 ORTHO05D004191 1.1e-29 134.4 133 56.4
MD09G1015900 Malus domestica HOM05D003498 ORTHO05D004191 1.4e-29 134.0 87 75.9
Psat5g244520 Pisum sativum HOM05D003498 ORTHO05D004191 1.8e-29 133.7 90 73.3
Ah.01g001720 Amaranthus hybridus HOM05D003498 ORTHO05D004191 2.4e-29 133.3 100 66.0
BraA10t43747Z Brassica rapa HOM05D003498 ORTHO05D004191 3.1e-29 132.9 126 61.9
SGA_v2.0_scaffold68G22828 Striga asiatica HOM05D003498 ORTHO05D004191 4.1e-29 132.5 124 56.5
CDE09G0325 Ceratophyllum demersum HOM05D003498 ORTHO05D004191 5.3e-29 132.1 94 69.1
A10p16650 Brassica napus HOM05D000758 ORTHO05D004191 7.0e-29 131.7 126 61.9
EL10Ac9g22898 Beta vulgaris HOM05D003498 ORTHO05D004191 9.1e-29 131.3 122 58.2
BcaC04g19772 Brassica carinata HOM05D003498 ORTHO05D004191 9.1e-29 131.3 126 61.1
C09p51820 Brassica napus HOM05D000758 ORTHO05D001216 9.1e-29 131.3 126 61.1
BolC9t58046H Brassica oleracea HOM05D000758 ORTHO05D004191 9.1e-29 131.3 126 61.1
Phvul.005G072200 Phaseolus vulgaris HOM05D003498 ORTHO05D004191 1.2e-28 131.0 101 67.3
Medtr0271s0010 Medicago truncatula HOM05D003498 ORTHO05D004191 2.0e-28 130.2 126 57.1
Sc07g0003610 Simmondsia chinensis HOM05D003498 ORTHO05D004191 2.6e-28 129.8 86 73.3
HPP92_003500 Vanilla planifolia HOM05D003498 ORTHO05D004191 3.5e-28 129.4 140 52.1
RcHm_v2.0_Chr2g0174641 Rosa chinensis HOM05D003498 ORTHO05D004191 5.9e-28 128.6 99 65.7
BcaB08g36258 Brassica carinata HOM05D003498 ORTHO05D004191 7.7e-28 128.3 131 57.3
DCAR_027394 Daucus carota HOM05D003498 ORTHO05D004191 7.7e-28 128.3 94 68.1
AUR62017642 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.7e-27 127.1 91 67.0
AUR62012870 Chenopodium quinoa HOM05D003498 ORTHO05D004191 5.0e-27 125.6 91 68.1
unitig_748.g7053 Utricularia gibba HOM05D003498 ORTHO05D004191 5.0e-27 125.6 85 74.1
HPP92_026896 Vanilla planifolia HOM05D003498 ORTHO05D004191 5.0e-27 125.6 89 69.7
AUR62012113 Chenopodium quinoa HOM05D003498 ORTHO05D004191 6.5e-27 125.2 88 71.6
AUR62042988 Chenopodium quinoa HOM05D003498 ORTHO05D004191 8.5e-27 124.8 91 67.0
AUR62003275 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.5e-26 124.0 91 67.0
AUR62007665 Chenopodium quinoa HOM05D003498 ORTHO05D004191 2.5e-26 123.2 123 53.7
CSS0025632 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 3.2e-26 122.9 120 56.7
AUR62020308 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.2e-26 122.5 123 52.8
SEGI_21909 Sequoiadendron giganteum HOM05D003498 ORTHO05D004191 1.2e-25 120.9 85 72.9
Haze_25285 Corylus avellana HOM05D003498 ORTHO05D004191 2.7e-25 119.8 131 55.7
Lalb_Chr01g0016861 Lupinus albus HOM05D003498 ORTHO05D004191 2.7e-25 119.8 130 53.8
AUR62025775 Chenopodium quinoa HOM05D003498 ORTHO05D018212 4.7e-25 119.0 123 51.2
Mapoly0001s0438 Marchantia polymorpha HOM05D003498 ORTHO05D004191 1.0e-24 117.9 87 66.7
AUR62022230 Chenopodium quinoa HOM05D003498 ORTHO05D000001 1.4e-24 117.5 117 53.0
AUR62036945 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.4e-24 117.5 123 51.2
Pp3c13_20320 Physcomitrium patens HOM05D003498 ORTHO05D004191 1.8e-24 117.1 130 50.8
AUR62042316 Chenopodium quinoa HOM05D003498 ORTHO05D004191 2.3e-24 116.7 89 64.0
SMO201G0123 Selaginella moellendorffii HOM05D003498 ORTHO05D004191 5.2e-24 115.5 88 64.8
CBR_g30299 Chara braunii HOM05D003498 ORTHO05D004191 1.5e-23 114.0 86 65.1
AagrBONN_evm.TU.Sc2ySwM_228.2546 Anthoceros agrestis HOM05D003498 ORTHO05D004191 9.7e-23 111.3 85 63.5
CBR_g50851 Chara braunii HOM05D003498 ORTHO05D004191 1.7e-22 110.5 85 64.7
PRCOL_00002439 Prasinoderma coloniale HOM05D003498 ORTHO05D004191 4.1e-21 105.9 85 61.2
MCO11G310 Micromonas commoda HOM05D003498 ORTHO05D004191 2.0e-20 103.6 86 59.3
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 1.1e-18 97.8 57 78.9
CSS0031931 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.5e-18 96.7 81 63.0
AUR62034396 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.2e-18 95.9 119 46.2
Cre03.g190800 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 4.2e-18 95.9 81 59.3
AUR62040396 Chenopodium quinoa HOM05D000421 ORTHO05D004191 1.2e-17 94.4 108 48.1
AUR62033715 Chenopodium quinoa HOM05D003498 ORTHO05D004191 2.1e-17 93.6 70 62.9
Cfa023828 Carpinus fangiana HOM05D003498 ORTHO05D004191 3.6e-17 92.8 86 55.8
Haze_27494 Corylus avellana HOM05D003498 ORTHO05D004191 3.7e-14 82.8 102 42.2
Cre03.g190750 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 6.3e-14 82.0 81 50.6
Actinidia38210 Actinidia chinensis HOM05D003498 ORTHO05D004191 4.5e-12 75.9 43 79.1
C05p26950 Brassica napus HOM05D003498 ORTHO05D004191 8.5e-11 71.6 95 48.4
BolC5t31414H Brassica oleracea HOM05D003498 ORTHO05D004191 4.2e-10 69.3 89 48.3
HanXRQChr05g0130941 Helianthus annuus HOM05D003498 ORTHO05D004191 9.4e-10 68.2 39 76.9
HanXRQChr10g0305081 Helianthus annuus HOM05D003498 ORTHO05D004191 1.6e-09 67.4 39 76.9
Aqoxy51s003 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 2.1e-09 67.0 36 83.3
AUR62041023 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.7e-09 65.9 57 56.1
TPR.G22201 Trifolium pratense HOM05D003498 ORTHO05D004191 2.3e-08 63.5 35 80.0
Manes.06G007550 Manihot esculenta HOM05D003498 ORTHO05D004191 4.4e-07 59.3 36 75.0
TPR.G16146 Trifolium pratense HOM05D003498 ORTHO05D004191 9.8e-07 58.2 50 58.0


User provided reference genes

Program Settings