Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 2.0e-264 915.2 456 100.0
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 1.2e-205 719.9 427 79.9
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.1e-201 706.8 415 81.2
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 2.7e-197 692.2 479 71.6
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 3.5e-197 691.8 487 70.4
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 6.4e-183 644.4 469 64.6
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 4.2e-182 641.7 461 68.1
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.6e-181 639.8 394 75.1
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 5.1e-180 634.8 396 75.5
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.3e-178 630.2 396 73.7
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 2.8e-178 629.0 410 71.0
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 4.8e-178 628.2 394 73.6
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 1.1e-177 627.1 396 73.2
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.1e-177 627.1 396 73.0
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 3.1e-177 625.5 471 64.3
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 9.0e-177 624.0 409 70.4
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 9.0e-177 624.0 396 73.2
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 1.5e-176 623.2 396 73.0
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.5e-176 623.2 405 71.1
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 5.8e-176 621.3 398 74.9
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 7.6e-176 620.9 406 70.2
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 7.6e-176 620.9 396 72.2
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 1.3e-175 620.2 465 64.7
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 1.7e-175 619.8 406 70.0
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 2.9e-175 619.0 396 72.5
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 3.8e-175 618.6 466 65.5
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.4e-174 616.7 446 67.3
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.4e-174 616.7 408 70.3
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 2.5e-174 615.9 453 65.6
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 5.5e-174 614.8 466 62.7
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 5.5e-174 614.8 403 70.5
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 1.2e-173 613.6 410 69.0
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 2.1e-173 612.8 414 69.8
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 6.0e-173 611.3 417 68.1
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 1.0e-172 610.5 403 69.5
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.8e-172 609.8 400 69.8
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 1.8e-172 609.8 403 70.5
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.8e-172 609.8 468 63.0
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 3.0e-172 609.0 468 61.1
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 3.9e-172 608.6 460 63.9
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 3.9e-172 608.6 403 69.7
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.9e-172 608.6 412 69.4
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 3.9e-172 608.6 468 61.3
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 6.7e-172 607.8 415 68.0
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.1e-171 607.1 468 60.9
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.5e-171 606.7 396 72.0
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.9e-171 606.3 392 71.4
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.9e-171 606.3 401 69.3
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 3.3e-171 605.5 399 69.7
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 3.3e-171 605.5 396 69.7
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 4.3e-171 605.1 442 65.4
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 4.3e-171 605.1 396 70.7
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 4.3e-171 605.1 394 70.3
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 7.4e-171 604.4 402 69.2
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.6e-170 603.2 396 70.2
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.6e-170 603.2 413 69.2
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.1e-170 602.8 393 71.2
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.1e-169 600.5 406 68.7
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 2.4e-169 599.4 396 67.9
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.1e-169 599.0 398 69.6
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 4.1e-169 598.6 398 70.6
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.2e-168 597.0 414 68.4
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 1.5e-168 596.7 408 67.6
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.0e-168 596.3 414 66.7
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.4e-168 595.5 408 67.2
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 4.5e-168 595.1 403 68.5
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 5.9e-168 594.7 407 67.8
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 7.6e-168 594.3 407 67.3
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 1.0e-167 594.0 413 66.8
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 2.9e-167 592.4 409 67.7
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 2.9e-167 592.4 400 68.2
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 3.8e-167 592.0 396 68.2
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 3.8e-167 592.0 409 68.0
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 1.4e-166 590.1 409 67.5
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 1.4e-166 590.1 409 67.5
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 3.2e-166 589.0 403 67.2
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.6e-165 585.5 443 63.7
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.1e-165 584.7 443 63.7
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 1.3e-164 583.6 409 66.7
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.3e-164 582.8 405 66.9
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 6.7e-164 581.3 413 66.3
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 8.7e-164 580.9 399 67.2
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.1e-163 580.5 397 68.3
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.9e-163 579.7 409 66.3
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.5e-163 579.3 407 66.6
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.7e-163 577.4 398 64.8
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.4e-161 573.5 393 69.0
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 9.1e-161 570.9 396 69.7
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 5.0e-159 565.1 410 63.2
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.1e-158 563.9 373 71.6
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 9.4e-158 560.8 412 64.8
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.6e-157 560.1 412 66.7
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 4.6e-157 558.5 388 67.3
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.6e-157 558.5 385 65.5
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.3e-154 550.4 405 62.0
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 8.2e-154 547.7 356 71.3
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.9e-150 536.6 355 69.3
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 1.9e-150 536.6 416 61.1
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 9.7e-147 524.2 344 71.8
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 8.2e-146 521.2 396 61.9
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.9e-143 512.7 354 66.1
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 2.5e-142 509.6 459 57.5
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.0e-140 504.2 324 74.4
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.1e-134 484.2 325 70.5
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 5.5e-134 481.9 323 69.7
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.3e-119 434.1 408 51.2
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 4.0e-116 422.5 404 51.2
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 3.4e-115 419.5 354 58.5
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 9.8e-115 417.9 395 51.6
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 6.4e-114 415.2 407 50.6
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 4.0e-108 396.0 266 71.8
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 7.0e-105 385.2 257 72.4
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 7.8e-104 381.7 435 45.1
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 3.1e-92 343.2 226 73.5
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 6.9e-84 315.5 242 58.7
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 7.6e-67 258.8 184 60.3
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.3e-63 247.3 166 71.7
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 2.5e-62 243.8 207 56.5
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 9.6e-62 241.9 159 66.0
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 3.4e-59 233.4 158 69.6
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.0e-58 231.9 173 67.6
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 2.2e-50 204.1 128 68.0
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 3.9e-39 166.8 142 52.8
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 4.8e-29 133.3 382 29.1
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.6e-27 128.3 417 27.3
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 2.5e-25 120.9 86 68.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 3.0e-23 114.0 346 26.9
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 5.9e-19 99.8 431 28.8
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 8.3e-13 79.3 55 69.1
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 4.1e-12 77.0 80 55.0
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 6.6e-10 69.7 102 38.2
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 4.2e-09 67.0 177 29.9
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.6e-08 65.1 61 50.8
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.6e-08 65.1 61 50.8
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 3.0e-07 60.8 56 48.2
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 7.5e-06 56.2 92 38.0


User provided reference genes

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