Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 9.6e-294 1012.7 486 100.0
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 3.7e-269 931.0 486 91.8
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.2e-266 921.8 482 91.9
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.8e-253 878.2 486 86.0
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.8e-253 878.2 486 86.0
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.4e-252 875.2 483 85.9
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 3.1e-252 874.8 486 85.4
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.3e-252 874.0 483 86.3
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 9.1e-252 873.2 483 85.3
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.0e-251 872.1 483 85.7
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 3.5e-251 871.3 461 88.5
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.7e-250 869.0 486 84.2
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.7e-250 869.0 483 84.9
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.9e-250 868.2 483 84.9
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 6.5e-250 867.1 485 85.2
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.9e-249 865.5 489 84.9
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 5.5e-249 864.0 483 85.5
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 5.5e-249 864.0 476 85.5
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.2e-249 863.6 483 83.6
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.2e-248 862.8 476 85.5
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.6e-248 862.4 476 86.1
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.6e-248 862.4 482 85.1
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.1e-248 862.1 483 85.1
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.1e-248 862.1 446 90.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.1e-248 862.1 483 83.4
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 3.6e-248 861.3 475 85.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 4.7e-248 860.9 486 84.4
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 6.1e-248 860.5 474 85.0
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 8.0e-248 860.1 486 84.8
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.0e-247 859.8 483 84.1
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.8e-247 859.0 490 83.7
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 2.3e-247 858.6 483 84.5
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 2.3e-247 858.6 478 85.1
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 5.2e-247 857.4 477 84.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 6.7e-247 857.1 476 85.7
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 6.7e-247 857.1 443 90.3
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.1e-246 856.3 483 83.2
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.1e-246 856.3 475 84.8
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 2.0e-246 855.5 475 85.1
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.4e-246 854.4 491 83.5
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.7e-246 854.0 475 85.1
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.2e-245 852.0 475 84.4
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.8e-245 851.7 484 84.1
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 3.7e-245 851.3 485 83.1
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 6.3e-245 850.5 498 81.5
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.4e-244 848.6 485 82.7
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 2.4e-244 848.6 476 83.4
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.1e-244 848.2 490 82.7
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 4.1e-244 847.8 487 83.0
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 4.1e-244 847.8 486 83.1
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.6e-243 845.9 476 83.0
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.6e-243 845.9 476 83.8
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 3.5e-243 844.7 483 82.4
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.0e-242 843.2 483 83.4
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.0e-242 843.2 483 82.2
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 8.5e-242 840.1 477 83.2
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.9e-241 839.0 477 82.8
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 5.5e-241 837.4 486 82.7
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.6e-240 835.9 490 83.7
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.6e-240 835.9 486 83.1
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.6e-240 835.9 486 83.7
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 2.7e-240 835.1 472 83.5
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 2.7e-240 835.1 477 84.1
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.0e-239 833.2 476 82.6
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.8e-239 832.4 486 81.9
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 4.0e-239 831.2 487 81.5
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 4.0e-239 831.2 489 83.2
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 6.8e-239 830.5 475 81.7
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 8.8e-239 830.1 477 82.4
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.5e-238 829.3 484 82.4
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 2.6e-238 828.6 484 81.6
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 7.5e-238 827.0 480 81.7
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 7.5e-238 827.0 485 81.2
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 7.5e-238 827.0 486 81.5
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 7.5e-238 827.0 486 80.7
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 9.8e-238 826.6 456 83.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.7e-237 825.9 487 81.9
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.8e-237 825.1 458 85.2
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 4.8e-237 824.3 480 81.2
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.4e-236 822.8 480 81.2
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.4e-236 822.8 456 83.6
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 1.8e-236 822.4 479 81.4
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.4e-236 822.0 480 81.0
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 3.1e-236 821.6 484 80.4
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.1e-236 821.2 477 81.1
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 7.0e-236 820.5 480 81.0
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 9.1e-236 820.1 478 81.2
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.0e-235 818.9 477 80.7
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.0e-235 818.9 486 81.7
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 3.5e-235 818.1 484 81.6
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.0e-234 816.6 484 81.4
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 3.8e-234 814.7 488 79.7
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.8e-234 814.7 487 80.3
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.1e-233 813.1 484 80.2
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.2e-233 810.4 499 79.6
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.6e-232 809.3 504 78.0
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 2.8e-229 798.5 484 79.1
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.0e-226 790.0 483 78.9
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 3.6e-224 781.6 509 76.0
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.4e-222 774.6 448 81.7
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 1.0e-218 763.5 513 75.0
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.9e-217 759.2 457 79.9
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-217 758.8 509 74.3
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 5.8e-214 747.7 486 75.3
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 5.4e-212 741.1 489 74.2
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 2.8e-208 728.8 483 73.9
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 3.6e-208 728.4 499 72.7
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.2e-206 723.4 478 73.0
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 3.4e-206 721.8 486 70.8
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 6.0e-203 711.1 391 85.2
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.7e-202 709.5 449 73.5
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.2e-200 703.4 475 71.8
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 4.6e-195 684.9 486 70.8
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 8.4e-189 664.1 464 71.6
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 6.7e-178 627.9 464 67.5
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.6e-177 624.8 363 79.3
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.4e-174 615.5 363 78.8
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 6.2e-168 594.7 478 64.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.3e-159 565.1 419 69.9
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 7.7e-150 534.6 304 80.3
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 3.7e-144 515.8 281 84.7
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 2.4e-143 513.1 410 61.5
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.4e-143 513.1 304 78.3
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 6.9e-143 511.5 275 85.5
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 3.0e-138 496.1 459 54.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 7.0e-127 458.4 308 71.4
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 3.5e-126 456.1 311 72.3
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.4e-106 391.0 211 86.3
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.4e-105 386.3 256 72.7
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.6e-102 377.5 228 76.8
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.6e-102 377.5 228 76.8
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.3e-93 347.8 418 47.6
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 2.8e-91 340.1 200 82.0
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.9e-87 327.4 470 43.8
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.8e-74 284.3 150 86.0
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.2e-73 281.6 433 42.0
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 4.9e-64 249.6 185 67.6
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 3.2e-63 246.9 185 67.0
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.3e-59 235.0 171 67.8
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 6.2e-59 232.6 171 67.3
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 2.9e-48 197.2 111 83.8
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.8e-48 196.8 99 85.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.8e-48 196.8 99 85.9
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 9.0e-42 175.6 97 86.6
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.4e-37 161.8 105 70.5
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.3e-36 156.8 95 83.2
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 2.9e-32 144.1 77 83.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.1e-28 132.1 77 79.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 2.6e-28 131.0 88 71.6
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.4e-23 115.2 133 45.9
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 8.0e-22 109.4 66 71.2
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 4.4e-20 103.6 56 80.4
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 5.0e-16 90.1 73 65.8
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 8.5e-16 89.4 72 65.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 8.5e-16 89.4 72 65.3
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 9.4e-15 85.9 45 82.2
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 8.8e-13 79.3 46 78.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 8.2e-11 72.8 34 94.1
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 3.1e-10 70.9 64 59.4
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.6e-09 68.6 83 47.0
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.5e-09 67.4 62 61.3
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 9.4e-07 59.3 40 65.0
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 1.6e-06 58.5 33 78.8


User provided reference genes

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