Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.4e-124 448.0 229 100.0
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 7.6e-116 420.6 222 97.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 7.6e-116 420.6 222 97.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 7.6e-116 420.6 222 97.3
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 7.1e-114 414.1 222 95.9
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 3.5e-113 411.8 222 95.5
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-112 410.2 222 95.5
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.3e-112 409.8 222 95.5
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.8e-112 409.5 222 95.5
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 3.9e-112 408.3 222 95.0
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 3.9e-112 408.3 222 95.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.1e-112 407.9 222 95.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 6.7e-112 407.5 222 95.0
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.3e-111 404.8 222 94.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 5.6e-111 404.4 222 94.1
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.6e-110 402.9 218 95.4
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.6e-110 402.9 218 95.4
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.4e-109 399.8 216 95.4
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 5.8e-108 394.4 213 95.3
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.9e-106 389.4 221 90.5
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 2.5e-106 389.0 222 92.3
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 3.2e-106 388.7 222 91.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 6.7e-104 380.9 222 89.6
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.4e-100 368.6 212 90.6
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.4e-100 368.6 216 89.8
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 3.8e-99 365.2 222 85.6
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.9e-99 364.8 218 87.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 4.2e-90 335.1 224 83.9
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 9.4e-90 334.0 222 81.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.2e-89 333.6 222 82.4
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 3.3e-87 325.5 222 80.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 4.1e-85 318.5 222 77.9
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 6.9e-85 317.8 175 93.1
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.2e-84 317.0 222 78.4
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-77 293.9 216 78.2
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.0e-75 287.3 173 88.4
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 3.8e-75 285.4 160 94.4
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.8e-72 274.2 159 88.1
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 4.1e-69 265.4 153 91.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.0e-67 260.8 177 81.4
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.1e-66 257.3 222 65.3
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 4.7e-65 251.9 194 70.1
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.5e-63 246.9 136 94.1
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 2.6e-63 246.1 161 82.6
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.5e-60 235.3 216 65.3
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 3.2e-58 229.2 137 88.3
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 6.8e-56 221.5 203 62.6
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.0e-55 219.9 116 95.7
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-53 214.2 116 91.4
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 5.2e-48 195.3 160 68.8
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 2.0e-44 183.3 153 67.3
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 2.3e-43 179.9 223 48.9
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 4.7e-41 172.2 94 94.7
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 6.8e-40 168.3 136 67.6
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.0e-39 166.8 96 90.6
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 2.0e-39 166.8 197 50.8
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 2.6e-39 166.4 95 91.6
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-36 157.5 91 89.0
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-35 154.1 79 94.9
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 3.9e-35 152.5 79 92.4
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 3.9e-35 152.5 79 93.7
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.3e-34 149.4 83 88.0
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 3.3e-34 149.4 350 35.7
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 5.6e-34 148.7 79 91.1
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.4e-32 144.1 222 45.5
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.4e-32 144.1 79 91.1
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 3.4e-31 139.4 112 71.4
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.1e-28 130.2 95 74.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.5e-28 129.4 95 74.7
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-27 127.5 80 78.8
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.3e-24 116.7 135 45.9
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.7e-22 109.4 92 70.7
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.6e-20 104.0 76 71.1
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-18 97.1 52 90.4
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 5.6e-18 95.5 114 54.4
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 9.6e-18 94.7 116 52.6
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 6.2e-17 92.0 46 95.7
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.8e-16 88.6 129 46.5
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-15 87.4 115 49.6
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 2.6e-15 86.7 97 56.7
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.3e-13 78.2 49 85.7
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.3e-13 78.2 49 85.7
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-12 77.8 60 66.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.7e-12 76.6 47 85.1
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 7.8e-12 75.1 44 84.1
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.0e-11 74.7 45 88.9
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 5.1e-11 72.4 33 93.9
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.3e-10 69.3 36 88.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.3e-10 68.6 40 82.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.3e-10 68.6 40 82.5
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.6e-09 67.4 40 82.5
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-09 67.0 49 71.4
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 8.1e-09 65.1 44 79.5
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 8.1e-09 65.1 44 79.5
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-07 60.8 47 70.2
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-06 57.8 33 81.8
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.2e-06 57.0 97 43.3


User provided reference genes

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