Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 4.6e-170 601.3 332 100.0
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.1e-143 512.7 332 86.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 9.3e-131 470.7 320 77.8
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.3e-129 466.1 334 71.6
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 5.6e-128 461.5 333 75.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.6e-127 459.9 331 74.3
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 8.1e-127 457.6 338 82.5
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.1e-126 457.2 332 69.0
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.8e-126 456.4 330 70.3
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 9.0e-126 454.1 329 72.9
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 5.8e-125 451.4 322 74.2
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-124 450.3 332 71.4
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.2e-124 449.5 328 69.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.1e-123 447.2 327 68.2
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.4e-123 446.8 333 71.5
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.9e-123 446.4 332 69.0
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.9e-123 446.4 332 69.3
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 5.5e-123 444.9 327 69.1
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.5e-123 444.9 329 72.6
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.1e-123 444.5 333 70.9
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.1e-123 444.5 333 70.9
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 9.3e-123 444.1 358 65.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.6e-122 443.4 332 72.9
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.6e-122 443.4 332 68.4
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.1e-122 443.0 329 69.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.1e-122 443.0 331 71.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.1e-122 443.0 327 68.5
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.7e-122 442.6 331 72.5
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 3.5e-122 442.2 334 68.6
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 6.0e-122 441.4 329 71.7
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 6.0e-122 441.4 329 71.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 6.0e-122 441.4 327 71.9
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.3e-121 439.5 332 68.7
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.0e-121 439.1 332 69.9
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 8.7e-121 437.6 328 72.9
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.1e-120 437.2 329 68.4
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.5e-120 436.8 332 70.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.3e-120 435.6 329 74.2
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 4.3e-120 435.3 338 70.4
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 9.6e-120 434.1 320 70.0
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-119 433.7 332 67.2
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.3e-119 433.7 341 69.8
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.0e-118 428.7 319 68.3
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 4.0e-118 428.7 319 67.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 9.0e-118 427.6 319 67.4
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.2e-117 427.2 324 70.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.0e-117 426.4 326 72.4
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 3.4e-117 425.6 320 67.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 5.8e-117 424.9 355 61.7
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 5.8e-117 424.9 323 66.9
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 5.8e-117 424.9 324 69.4
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 5.8e-117 424.9 332 69.0
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.3e-116 423.7 319 70.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.3e-116 423.7 332 70.8
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.2e-116 422.9 328 69.2
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 2.2e-116 422.9 324 69.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 3.8e-116 422.2 329 66.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.9e-116 421.8 319 70.2
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 4.9e-116 421.8 323 70.0
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 6.5e-116 421.4 336 71.4
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.1e-115 420.6 333 68.8
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.1e-115 420.6 331 68.3
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.4e-115 420.2 317 71.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.9e-115 419.9 331 64.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 3.2e-115 419.1 320 66.9
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 3.2e-115 419.1 316 66.8
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 4.2e-115 418.7 332 68.4
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 4.2e-115 418.7 330 69.4
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 5.5e-115 418.3 332 68.4
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 7.1e-115 417.9 330 65.5
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.3e-115 417.5 317 70.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 9.3e-115 417.5 328 65.9
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.6e-114 416.8 317 70.0
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 2.1e-114 416.4 314 72.0
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 3.5e-114 415.6 319 65.8
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.6e-114 415.2 254 79.5
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 7.9e-114 414.5 341 67.7
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.3e-113 413.7 319 69.0
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.3e-113 412.9 329 65.0
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 3.0e-113 412.5 328 68.0
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 3.9e-113 412.1 329 68.7
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.1e-113 411.8 318 70.1
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.7e-113 411.0 324 69.1
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 8.7e-113 411.0 330 71.5
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 9.7e-112 407.5 330 67.0
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.8e-111 406.0 332 63.6
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.4e-110 403.7 303 68.6
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.1e-110 402.1 316 68.4
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 6.9e-110 401.4 332 63.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 3.4e-109 399.1 317 68.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 7.6e-109 397.9 317 64.0
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 3.8e-108 395.6 311 65.0
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.0e-105 387.5 299 67.2
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.0e-105 387.5 272 70.6
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.9e-104 383.3 327 68.8
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.5e-104 382.9 319 62.7
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 3.3e-104 382.5 275 69.5
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 7.4e-104 381.3 297 66.7
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 9.7e-104 380.9 299 67.9
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 6.3e-103 378.3 299 71.9
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.4e-102 376.3 295 65.8
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 4.1e-102 375.6 326 60.7
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.2e-100 369.8 320 63.4
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.8e-100 369.0 250 76.0
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.0e-100 368.6 326 70.6
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 9.4e-99 364.4 220 82.3
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.7e-98 362.8 318 64.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.1e-98 361.7 295 68.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 7.9e-98 361.3 335 56.4
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.1e-97 358.6 299 64.2
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 6.3e-95 351.7 308 64.9
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 6.3e-95 351.7 311 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.8e-94 350.1 300 64.7
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 6.9e-94 348.2 323 63.8
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 2.0e-93 346.7 220 75.5
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.5e-91 339.7 275 69.8
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 2.7e-90 336.3 237 68.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.0e-86 321.6 266 62.4
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 6.5e-84 315.1 326 54.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.5e-83 313.2 262 61.1
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.8e-79 298.9 230 68.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.8e-78 297.0 241 65.6
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.5e-76 288.1 273 56.4
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 8.8e-73 278.1 299 55.2
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.8e-70 270.4 161 80.7
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 7.0e-70 268.5 248 58.9
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 9.1e-70 268.1 232 61.6
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 6.1e-66 255.4 230 53.9
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 7.5e-64 248.4 171 65.5
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.0e-61 240.4 296 52.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.0e-60 238.0 212 60.4
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.7e-60 237.3 229 56.8
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.9e-60 236.5 191 69.1
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.4e-57 227.6 221 55.7
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.4e-57 227.6 221 55.7
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 5.2e-57 225.7 194 63.4
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.4e-56 223.0 225 56.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 8.3e-55 218.4 139 75.5
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.4e-54 217.6 231 50.2
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.6e-53 214.2 221 56.6
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 5.6e-51 205.7 240 49.6
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.1e-50 203.8 136 74.3
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 7.5e-48 195.3 195 60.0
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 6.4e-47 192.2 239 50.6
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.5e-43 180.3 116 81.9
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 6.2e-42 175.6 239 43.1
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.1e-37 160.6 139 59.0
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 6.0e-37 159.1 162 50.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 7.8e-37 158.7 149 50.3
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.5e-35 153.7 263 33.1
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.1e-33 148.3 109 59.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 5.8e-32 142.5 181 46.4
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 5.8e-32 142.5 181 46.4
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-31 141.4 181 46.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.7e-29 133.7 156 42.9
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.5e-29 133.3 191 45.5
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-24 118.2 82 76.8
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.4e-24 116.7 175 49.7
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.2e-23 114.0 271 41.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-21 107.8 95 52.6
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 7.8e-21 105.5 123 48.0
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.3e-20 104.8 82 62.2
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-20 104.8 129 51.2
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.7e-20 104.4 65 64.6
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 3.9e-20 103.2 63 63.5
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 6.6e-20 102.4 65 63.1
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 1.9e-19 100.9 63 65.1
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 7.3e-19 99.0 62 64.5
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 7.3e-19 99.0 62 64.5
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 2.8e-18 97.1 65 61.5
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 8.1e-18 95.5 102 41.2
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.1e-17 95.1 61 63.9
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 5.3e-17 92.8 67 58.2
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 5.3e-17 92.8 67 58.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.0e-16 90.9 89 57.3
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 2.9e-15 87.0 63 57.1
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 2.9e-15 87.0 63 57.1
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 8.4e-15 85.5 79 53.2
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.6e-13 81.3 71 57.7
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.8e-12 77.8 110 32.7
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 6.4e-07 59.3 70 44.3
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.1e-06 58.5 71 47.9
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 9.3e-06 55.5 102 47.1
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 9.3e-06 55.5 75 46.7


User provided reference genes

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