Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 2.4e-114 416.0 292 100.0
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 7.0e-74 281.6 211 78.7
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.6e-62 243.8 160 83.8
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 1.6e-62 243.8 209 68.4
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 2.1e-62 243.4 206 70.4
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.8e-61 240.4 206 68.4
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 5.2e-61 238.8 208 67.3
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 1.5e-60 237.3 214 66.4
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 9.8e-60 234.6 213 68.1
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.7e-59 233.8 214 65.9
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.7e-59 233.8 212 63.7
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 4.9e-59 232.3 200 64.5
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 4.9e-59 232.3 205 63.9
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 1.1e-58 231.1 206 62.6
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 1.9e-58 230.3 213 62.9
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 2.4e-58 229.9 208 63.9
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.4e-58 229.9 188 68.1
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 3.2e-58 229.6 208 66.3
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.2e-57 227.6 214 62.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 1.2e-57 227.6 208 64.9
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 2.1e-57 226.9 188 70.7
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 2.7e-57 226.5 205 63.9
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 2.7e-57 226.5 214 62.1
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 2.7e-57 226.5 213 62.4
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 2.7e-57 226.5 191 68.6
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 4.6e-57 225.7 206 63.1
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.0e-56 224.6 205 63.4
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 1.7e-56 223.8 211 64.0
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.7e-56 223.8 187 65.2
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 2.3e-56 223.4 191 66.5
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 3.0e-56 223.0 173 68.8
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 3.9e-56 222.6 201 66.2
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 5.1e-56 222.2 189 66.1
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.9e-55 220.3 205 64.9
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 2.5e-55 219.9 212 60.4
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 7.3e-55 218.4 188 67.0
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 9.5e-55 218.0 211 62.6
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 1.2e-54 217.6 209 60.8
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-54 217.2 202 63.9
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.6e-54 217.2 209 61.2
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 1.6e-54 217.2 183 67.8
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 1.6e-54 217.2 209 61.2
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 2.1e-54 216.9 190 64.7
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.8e-54 216.5 202 63.4
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.8e-54 216.5 200 66.5
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 3.6e-54 216.1 200 64.0
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 4.7e-54 215.7 151 71.5
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 6.2e-54 215.3 202 63.4
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 6.2e-54 215.3 204 59.8
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 1.8e-53 213.8 200 63.5
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 2.3e-53 213.4 191 61.8
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 4.0e-53 212.6 192 64.1
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 5.2e-53 212.2 221 60.6
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 2.6e-52 209.9 206 62.1
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 9.9e-52 208.0 147 72.8
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.7e-51 207.2 205 59.0
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 2.9e-51 206.5 208 57.2
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.9e-51 206.5 248 54.8
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 3.8e-51 206.1 212 58.0
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 6.4e-51 205.3 188 64.4
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 8.4e-51 204.9 197 63.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 4.1e-50 202.6 205 59.5
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 5.4e-50 202.2 211 61.6
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 9.2e-50 201.4 188 63.3
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 1.2e-49 201.1 185 62.7
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.6e-49 200.7 157 64.3
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.1e-49 200.3 152 63.2
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 6.0e-49 198.7 183 62.8
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.0e-48 198.0 183 63.4
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 3.0e-48 196.4 210 59.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 3.0e-48 196.4 243 53.1
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 3.0e-48 196.4 210 59.5
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 3.9e-48 196.1 195 60.0
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 5.1e-48 195.7 195 60.5
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 1.1e-47 194.5 225 55.6
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 1.1e-47 194.5 185 64.9
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.9e-47 193.7 208 57.2
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 1.9e-47 193.7 208 57.2
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 2.5e-47 193.4 194 57.2
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 4.3e-47 192.6 144 65.3
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 5.6e-47 192.2 206 57.8
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 5.6e-47 192.2 206 57.8
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 9.6e-47 191.4 189 61.9
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.2e-46 191.0 206 58.7
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.6e-46 190.7 186 61.3
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 1.6e-46 190.7 213 54.9
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.6e-46 190.7 191 60.2
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.6e-46 190.7 191 60.2
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 4.7e-46 189.1 187 61.5
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 1.1e-45 188.0 222 55.9
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 1.1e-45 188.0 210 57.6
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 1.4e-45 187.6 222 55.9
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 2.4e-45 186.8 212 57.1
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 2.0e-44 183.7 213 53.1
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 2.0e-44 183.7 206 57.8
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 3.4e-44 183.0 201 58.2
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 3.4e-44 183.0 201 58.2
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 3.4e-44 183.0 205 58.0
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 3.4e-44 183.0 190 58.9
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 3.4e-44 183.0 212 53.3
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.4e-42 177.6 202 52.5
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 1.7e-40 170.6 186 62.9
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.0e-40 169.9 127 66.9
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 8.7e-40 168.3 156 64.7
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 1.1e-37 161.4 224 48.7
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 1.7e-35 154.1 151 53.0
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 1.9e-34 150.6 167 57.5
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 7.1e-34 148.7 228 49.1
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 1.0e-32 144.8 85 80.0
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.0e-32 144.8 229 46.7
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 3.0e-32 143.3 95 73.7
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 3.3e-31 139.8 99 68.7
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 5.6e-31 139.0 217 41.9
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.6e-30 137.5 218 43.1
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 2.8e-30 136.7 200 49.5
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 8.1e-30 135.2 107 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.3e-27 127.9 180 45.6
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.9e-26 124.0 161 49.7
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 1.6e-25 120.9 157 49.7
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.8e-24 117.5 203 38.4
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 3.0e-24 116.7 124 46.8
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.9e-23 114.0 114 54.4
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.5e-23 113.6 94 60.6
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 1.2e-20 104.8 145 43.4
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 6.3e-14 82.4 76 67.1
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 2.0e-12 77.4 49 73.5
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 1.0e-11 75.1 125 36.8


User provided reference genes

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