Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 0.0e+00 1176.0 581 100.0
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 9.4e-280 966.5 557 83.7
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 5.7e-269 930.6 578 80.1
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.3e-244 849.7 587 71.7
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 1.3e-236 823.2 579 69.8
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.1e-235 820.1 535 71.6
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.9e-235 819.3 540 72.0
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.4e-235 818.9 583 68.8
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.3e-233 812.4 537 71.7
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 3.9e-233 811.6 586 68.4
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.9e-232 809.3 580 67.6
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.3e-232 808.1 571 67.8
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 5.6e-232 807.7 583 67.2
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 9.6e-232 807.0 540 70.6
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.8e-230 802.7 571 67.6
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 4.0e-230 801.6 573 67.5
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.5e-229 799.7 571 67.6
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 3.4e-229 798.5 549 69.8
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.2e-228 795.8 571 67.8
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 4.9e-228 794.7 540 70.4
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.1e-227 793.5 580 66.4
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.4e-227 793.1 576 67.4
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.4e-227 792.3 578 67.5
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 5.4e-227 791.2 584 66.3
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 7.1e-227 790.8 581 66.6
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.1e-226 789.3 580 66.7
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 2.7e-226 788.9 577 67.1
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 4.6e-226 788.1 574 65.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.9e-224 782.7 556 67.3
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.9e-224 782.7 550 68.4
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 2.5e-224 782.3 580 66.4
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.8e-222 776.2 589 65.4
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 3.1e-222 775.4 577 64.8
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 2.0e-221 772.7 537 67.6
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.7e-220 769.6 595 63.2
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.1e-219 766.9 544 66.4
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.1e-219 766.9 552 66.7
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 5.4e-219 764.6 578 64.0
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 2.1e-218 762.7 582 64.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.7e-218 762.3 570 64.7
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.6e-218 761.5 552 66.5
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 1.0e-217 760.4 576 64.8
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 6.7e-217 757.7 552 66.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 4.3e-216 755.0 582 63.9
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 5.6e-216 754.6 582 63.9
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 7.4e-216 754.2 582 63.7
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.1e-215 752.7 582 63.7
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 8.1e-215 750.7 552 66.3
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.1e-214 750.4 570 64.4
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.1e-214 750.4 577 62.9
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.8e-214 749.6 577 64.5
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 2.4e-214 749.2 537 65.4
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 9.0e-214 747.3 584 64.4
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 1.2e-213 746.9 580 62.8
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 3.4e-213 745.3 582 62.0
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 7.6e-213 744.2 580 62.9
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 2.2e-212 742.7 582 63.9
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 6.7e-209 731.1 580 61.4
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.1e-208 730.3 551 63.7
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 4.3e-208 728.4 580 61.7
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.6e-207 726.5 617 57.9
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 2.1e-207 726.1 514 67.3
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.1e-206 723.8 582 61.2
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 4.5e-205 718.4 463 74.7
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 5.8e-205 718.0 542 62.9
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.3e-204 716.8 572 61.0
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 8.4e-204 714.1 537 62.4
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.4e-203 713.4 582 60.7
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 3.2e-203 712.2 580 61.9
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 4.6e-202 708.4 539 62.2
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 2.3e-201 706.1 627 56.8
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.0e-196 690.6 462 69.7
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 5.0e-196 688.3 460 70.2
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 2.3e-193 679.5 460 69.8
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 5.3e-190 668.3 460 68.3
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 2.5e-187 659.4 545 59.1
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 9.4e-187 657.5 517 62.1
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 3.3e-184 649.0 536 58.0
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 4.1e-182 642.1 463 68.7
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 4.2e-179 632.1 539 58.8
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.4e-174 617.1 612 52.6
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 1.3e-172 610.5 532 57.7
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.7e-170 602.8 511 59.7
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 8.0e-170 601.3 462 64.3
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 7.0e-166 588.2 431 64.0
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 4.5e-165 585.5 401 69.8
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 2.3e-156 556.6 571 48.7
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 8.6e-156 554.7 553 51.7
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 2.5e-155 553.1 541 48.8
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 5.9e-149 531.9 577 46.8
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 3.3e-147 526.2 351 72.1
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 4.7e-146 522.3 568 46.5
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.0e-140 504.6 395 61.0
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.6e-136 490.0 323 69.3
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 2.0e-128 463.8 495 48.3
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.6e-117 427.6 355 56.9
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 7.8e-117 425.2 296 65.9
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 1.1e-110 404.8 239 79.9
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 5.4e-110 402.5 540 42.4
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 5.1e-108 396.0 267 69.7
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 7.3e-107 392.1 284 65.5
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 9.6e-99 365.2 271 66.1
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 5.8e-96 355.9 702 36.0
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 3.5e-93 346.7 551 40.1
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.4e-89 334.7 566 36.0
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 1.1e-86 325.1 249 63.1
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.3e-74 285.0 453 36.4
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.5e-70 270.8 496 37.3
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 9.1e-65 252.3 172 69.2
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 5.9e-64 249.6 188 60.1
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 2.8e-58 230.7 141 74.5
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.5e-54 218.4 545 29.0
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.5e-54 218.4 518 29.7
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 8.3e-50 202.6 397 34.5
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 4.4e-43 180.3 124 69.4
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.7e-26 125.2 114 52.6
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.2e-25 120.9 84 67.9
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 2.0e-24 118.2 97 59.8
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 2.5e-22 111.3 121 55.4
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 2.5e-22 111.3 507 26.8
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 5.2e-20 103.6 82 61.0
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 5.8e-19 100.1 57 73.7
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.7e-18 98.6 143 42.0
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.2e-17 94.4 109 45.9
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 9.2e-17 92.8 105 45.7
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 3.0e-15 87.8 74 56.8
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.3e-14 84.3 115 41.7
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.3e-14 84.0 181 34.3
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 5.6e-14 83.6 57 59.6
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 9.5e-14 82.8 118 39.8
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.9e-09 68.6 46 69.6
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.6e-08 65.5 55 54.5
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 4.6e-08 63.9 35 80.0
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 3.0e-07 61.2 41 63.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 3.0e-07 61.2 41 63.4
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 2.5e-06 58.2 42 66.7


User provided reference genes

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