Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0110451 Helianthus annuus HOM05D001588 ORTHO05D006118 3.4e-43 177.9 91 100.0
ECA246G0963 Erigeron canadensis HOM05D001588 ORTHO05D006118 2.0e-19 99.0 77 72.7
Lsat_1_v5_gn_3_7600 Lactuca sativa HOM05D001588 ORTHO05D006118 3.8e-18 94.7 77 68.8
HanXRQChr15g0469471 Helianthus annuus HOM05D001588 ORTHO05D006118 5.0e-18 94.4 77 67.5
HanXRQChr06g0165801 Helianthus annuus HOM05D001588 ORTHO05D006118 1.1e-17 93.2 77 68.8
HanXRQChr02g0046401 Helianthus annuus HOM05D001588 ORTHO05D006118 3.2e-17 91.7 77 63.6
TPR.G12758 Trifolium pratense HOM05D001588 ORTHO05D006118 7.9e-16 87.0 77 59.7
Lj4g0014630 Lotus japonicus HOM05D001588 ORTHO05D006118 1.0e-15 86.7 77 59.7
Lj1g0021351 Lotus japonicus HOM05D001588 ORTHO05D006118 1.4e-15 86.3 77 59.7
Medtr8g098460 Medicago truncatula HOM05D001588 ORTHO05D006118 2.3e-15 85.5 77 59.7
Ca_17543_v3 Cicer arietinum L. HOM05D001588 ORTHO05D006118 3.9e-15 84.7 77 58.4
QL12p018372 Quercus lobata HOM05D001588 ORTHO05D006118 3.9e-15 84.7 77 58.4
Atru.chr9.2223 Acer truncatum HOM05D001588 ORTHO05D006118 5.1e-15 84.3 77 59.7
FAN04G2309 Fragaria x ananassa HOM05D001588 ORTHO05D006118 8.8e-15 83.6 77 59.7
FAN08G1628 Fragaria x ananassa HOM05D001588 ORTHO05D006118 8.8e-15 83.6 77 59.7
Rhsim07G0091600 Rhododendron simsii HOM05D001588 ORTHO05D006118 8.8e-15 83.6 77 61.0
Lalb_Chr16g0389911 Lupinus albus HOM05D001588 ORTHO05D006118 1.1e-14 83.2 77 57.1
Nn1g01478 Nelumbo nucifera HOM05D001588 ORTHO05D006118 1.1e-14 83.2 77 57.1
Actinidia27390 Actinidia chinensis HOM05D001588 ORTHO05D006118 1.5e-14 82.8 77 58.4
arahy.Tifrunner.gnm1.ann1.C1C7DX Arachis hypogaea HOM05D001588 ORTHO05D006118 1.5e-14 82.8 77 55.8
COL.COLO4_34441 Corchorus olitorius HOM05D001588 ORTHO05D006118 1.5e-14 82.8 77 57.1
MBI18_g19084_MAGBIO Magnolia biondii HOM05D001588 ORTHO05D006118 1.5e-14 82.8 77 57.1
CSS0006311 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D006118 2.5e-14 82.0 77 58.4
CSS0014008 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D006118 2.5e-14 82.0 77 58.4
PGR031G0224 Punica granatum HOM05D001588 ORTHO05D006118 2.5e-14 82.0 77 57.1
TAR629G2281 Trochodendron aralioides HOM05D001588 ORTHO05D006118 2.5e-14 82.0 77 58.4
Duzib084G0785 Durio zibethinus HOM05D001588 ORTHO05D006118 3.3e-14 81.6 77 55.8
Glyma.08G013500 Glycine max HOM05D001588 ORTHO05D006118 3.3e-14 81.6 77 55.8
Thecc.03G276800 Theobroma cacao HOM05D001588 ORTHO05D006118 3.3e-14 81.6 77 55.8
vmacro13949 Vaccinium macrocarpon HOM05D001588 ORTHO05D006118 3.3e-14 81.6 77 58.4
CANSAT21G1525 Cannabis sativa HOM05D001588 ORTHO05D006118 4.3e-14 81.3 77 57.1
Actinidia33759 Actinidia chinensis HOM05D001588 ORTHO05D006118 5.7e-14 80.9 90 53.3
Haze_08869 Corylus avellana HOM05D001588 ORTHO05D006118 5.7e-14 80.9 77 57.1
Dinv37655 Davidia involucrata HOM05D001588 ORTHO05D006118 5.7e-14 80.9 77 57.1
Glyma.05G206600 Glycine max HOM05D001588 ORTHO05D006118 5.7e-14 80.9 77 55.8
Gohir.D12G229800 Gossypium hirsutum HOM05D001588 ORTHO05D006118 5.7e-14 80.9 77 55.8
Gorai.008G246100 Gossypium raimondii HOM05D001588 ORTHO05D006118 5.7e-14 80.9 77 55.8
Os04g0555900 Oryza sativa ssp. japonica HOM05D001588 ORTHO05D006118 5.7e-14 80.9 77 55.8
CANSAT21G1717 Cannabis sativa HOM05D001588 ORTHO05D006118 7.4e-14 80.5 77 55.8
Gohir.A12G227500 Gossypium hirsutum HOM05D001588 ORTHO05D006118 7.4e-14 80.5 77 54.5
TWI81G0248 Tripterygium wilfordii HOM05D001588 ORTHO05D006118 7.4e-14 80.5 77 57.1
Eucgr.D01864 Eucalyptus grandis HOM05D001588 ORTHO05D006118 9.7e-14 80.1 77 55.8
Hma1.2p1_1788F.1_g302410 Hydrangea macrophylla HOM05D001588 ORTHO05D006118 9.7e-14 80.1 77 57.1
Lj2A189T33 Lonicera japonica HOM05D001588 ORTHO05D006118 1.7e-13 79.3 77 57.1
Prupe.5G097600 Prunus persica HOM05D001588 ORTHO05D006118 1.7e-13 79.3 78 59.0
Ciclev10021870m.g Citrus clementina HOM05D001588 ORTHO05D006118 2.2e-13 79.0 77 57.1
CsaV3_5G002940 Cucumis sativus L. HOM05D001588 ORTHO05D006118 2.2e-13 79.0 77 55.8
FAN13G0628 Fragaria x ananassa HOM05D001588 ORTHO05D006118 2.2e-13 79.0 77 57.1
VMungo0251G1987 Vigna mungo HOM05D001588 ORTHO05D006118 2.2e-13 79.0 77 54.5
Aqoxy5G04005 Aquilegia oxysepala HOM05D001588 ORTHO05D006118 2.8e-13 78.6 77 53.2
SalBow3G3462 Salvia bowleyana HOM05D001588 ORTHO05D006118 2.8e-13 78.6 77 55.8
ATR0680G293 Amborella trichopoda HOM05D001588 ORTHO05D006118 3.7e-13 78.2 77 51.9
Migut.N02016 Erythranthe guttata HOM05D001588 ORTHO05D006118 4.8e-13 77.8 77 53.2
HanXRQChr15g0469621 Helianthus annuus HOM05D001588 ORTHO05D006118 4.8e-13 77.8 53 73.6
Medtr7g103510 Medicago truncatula HOM05D001588 ORTHO05D006118 4.8e-13 77.8 77 51.9
MELO3C005662.2 Cucumis melo HOM05D001588 ORTHO05D006118 6.3e-13 77.4 77 54.5
CiPaw.11G137200 Carya illinoinensis HOM05D001588 ORTHO05D006118 8.2e-13 77.0 77 54.5
RcHm_v2.0_Chr7g0198231 Rosa chinensis HOM05D001588 ORTHO05D006118 8.2e-13 77.0 78 56.4
GSVIVG01019772001 Vitis vinifera HOM05D001588 ORTHO05D006118 8.2e-13 77.0 77 54.5
Migut.N01981 Erythranthe guttata HOM05D001588 ORTHO05D006118 1.1e-12 76.6 77 51.9
FvH4_5g02070 Fragaria vesca HOM05D001588 ORTHO05D006118 1.1e-12 76.6 78 57.7
FAN18G1170 Fragaria x ananassa HOM05D001588 ORTHO05D006118 1.1e-12 76.6 78 57.7
PSO170G0774 Papaver somniferum HOM05D001588 ORTHO05D006118 1.1e-12 76.6 77 53.2
CARHR254790 Cardamine hirsuta HOM05D001588 ORTHO05D006118 1.4e-12 76.3 77 50.6
AUR62010596 Chenopodium quinoa HOM05D001588 ORTHO05D006118 1.4e-12 76.3 77 55.8
MD06G1079200 Malus domestica HOM05D001588 ORTHO05D006118 1.4e-12 76.3 78 55.1
Psat6g176200 Pisum sativum HOM05D001588 ORTHO05D006118 1.4e-12 76.3 77 50.6
AT4G11640 Arabidopsis thaliana HOM05D001588 ORTHO05D006118 1.8e-12 75.9 77 51.9
MSTRG.25594 Avicennia marina HOM05D001588 ORTHO05D006118 2.4e-12 75.5 77 50.6
HanXRQChr15g0469611 Helianthus annuus HOM05D001588 ORTHO05D006118 2.4e-12 75.5 55 69.1
Psat7g008360 Pisum sativum HOM05D001588 ORTHO05D006118 2.4e-12 75.5 77 51.9
Hund14771 Selenicereus undatus HOM05D001588 ORTHO05D006118 2.4e-12 75.5 77 54.5
SGA_v2.0_scaffold253G45125 Striga asiatica HOM05D001588 ORTHO05D006118 2.4e-12 75.5 77 51.9
AL6G46210 Arabidopsis lyrata HOM05D001588 ORTHO05D006118 5.3e-12 74.3 77 50.6
Carub.0006s3072 Capsella rubella HOM05D001588 ORTHO05D006118 5.3e-12 74.3 77 50.6
AUR62017239 Chenopodium quinoa HOM05D001588 ORTHO05D006118 5.3e-12 74.3 77 53.2
HanXRQChr15g0469631 Helianthus annuus HOM05D001588 ORTHO05D006118 5.3e-12 74.3 53 71.7
HanXRQChr15g0469751 Helianthus annuus HOM05D001588 ORTHO05D006118 5.3e-12 74.3 55 70.9
HanXRQChr15g0469761 Helianthus annuus HOM05D001588 ORTHO05D006118 5.3e-12 74.3 53 71.7
HanXRQChr15g0469771 Helianthus annuus HOM05D001588 ORTHO05D006118 5.3e-12 74.3 53 71.7
Lj1g0019141 Lotus japonicus HOM05D001588 ORTHO05D006118 5.3e-12 74.3 88 50.0
Psat7g034240 Pisum sativum HOM05D001588 ORTHO05D006118 5.3e-12 74.3 77 48.1
AagrBONN_evm.TU.Sc2ySwM_344.4994 Anthoceros agrestis HOM05D001588 ORTHO05D006118 6.9e-12 73.9 74 55.4
AagrBONN_evm.TU.Sc2ySwM_344.5005 Anthoceros agrestis HOM05D001588 ORTHO05D006118 6.9e-12 73.9 74 55.4
Cc08_g14500 Coffea canephora HOM05D001588 ORTHO05D006118 6.9e-12 73.9 77 53.2
Phvul.002G288200 Phaseolus vulgaris HOM05D001588 ORTHO05D006118 6.9e-12 73.9 77 51.9
Cfa012158 Carpinus fangiana HOM05D001588 ORTHO05D006118 9.1e-12 73.6 83 53.0
Aa31LG9G10710 Aethionema arabicum HOM05D001588 ORTHO05D006118 1.2e-11 73.2 77 51.9
BcaC03g16342 Brassica carinata HOM05D001588 ORTHO05D006118 1.2e-11 73.2 77 50.6
C02p41670 Brassica napus HOM05D001588 ORTHO05D006118 1.2e-11 73.2 77 50.6
BolC2t10183H Brassica oleracea HOM05D001588 ORTHO05D006118 1.2e-11 73.2 77 50.6
Nitab4.5_0003907g0030 Nicotiana tabacum HOM05D001588 ORTHO05D006118 1.2e-11 73.2 77 53.2
THA.LOC104806384 Tarenaya hassleriana HOM05D001588 ORTHO05D006118 1.2e-11 73.2 77 51.9
Peaxi162Scf00102g01542 Petunia axillaris HOM05D001588 ORTHO05D006118 1.5e-11 72.8 77 51.9
Sp6g05900 Schrenkiella parvula HOM05D001588 ORTHO05D006118 1.5e-11 72.8 77 49.4
Sc07g0009680 Simmondsia chinensis HOM05D001588 ORTHO05D006118 1.5e-11 72.8 77 53.2
Ah.12g057170 Amaranthus hybridus HOM05D001588 ORTHO05D006118 2.0e-11 72.4 77 53.2
DCAR_000604 Daucus carota HOM05D001588 ORTHO05D006118 2.0e-11 72.4 77 51.9
BcaB05g23820 Brassica carinata HOM05D001588 ORTHO05D006118 2.6e-11 72.0 77 49.4
Mapoly0138s0043 Marchantia polymorpha HOM05D001588 ORTHO05D006118 2.6e-11 72.0 77 49.4
HPP92_008512 Vanilla planifolia HOM05D001588 ORTHO05D006118 2.6e-11 72.0 77 49.4
EL10Ac5g12783 Beta vulgaris HOM05D001588 ORTHO05D006118 3.4e-11 71.6 77 53.2
Thhalv10028795m.g Eutrema salsugineum HOM05D001588 ORTHO05D006118 3.4e-11 71.6 77 49.4
SEGI_39536 Sequoiadendron giganteum HOM05D001588 ORTHO05D006118 3.4e-11 71.6 77 50.6
Solyc08g008000.2 Solanum lycopersicum HOM05D001588 ORTHO05D006118 3.4e-11 71.6 77 50.6
A02p26200 Brassica napus HOM05D001588 ORTHO05D006118 4.5e-11 71.2 77 49.4
BraA02t07619Z Brassica rapa HOM05D001588 ORTHO05D006118 4.5e-11 71.2 77 49.4
Manes.02G023300 Manihot esculenta HOM05D001588 ORTHO05D006118 4.5e-11 71.2 76 51.3
Lj1g0001953 Lotus japonicus HOM05D001588 ORTHO05D006118 5.9e-11 70.9 77 54.5
Potri.001G106000 Populus trichocarpa HOM05D001588 ORTHO05D006118 5.9e-11 70.9 77 49.4
ClCG01G002850 Citrullus lanatus HOM05D001588 ORTHO05D006118 7.7e-11 70.5 73 53.4
HanXRQChr15g0469461 Helianthus annuus HOM05D001588 ORTHO05D006118 7.7e-11 70.5 53 69.8
Sopen08g003870 Solanum pennellii HOM05D001588 ORTHO05D006118 7.7e-11 70.5 77 49.4
Sopen08g003880 Solanum pennellii HOM05D001588 ORTHO05D006118 1.3e-10 69.7 77 49.4
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.3e-10 69.7 77 50.6
Manes.02G023000 Manihot esculenta HOM05D001588 ORTHO05D006118 1.7e-10 69.3 76 50.0
PGSC0003DMG401014619 Solanum tuberosum HOM05D001588 ORTHO05D006118 1.7e-10 69.3 77 48.1
CAN.G792.82 Capsicum annuum HOM05D001588 ORTHO05D006118 2.2e-10 68.9 77 49.4
Sabra01G0080300 Salix brachista HOM05D001588 ORTHO05D006118 2.2e-10 68.9 77 49.4
SMO351G0491 Selaginella moellendorffii HOM05D001588 ORTHO05D006118 2.2e-10 68.9 77 53.2
CBR_g31514 Chara braunii HOM05D001588 ORTHO05D006118 3.8e-10 68.2 77 49.4
Sopen08g003890 Solanum pennellii HOM05D001588 ORTHO05D006118 3.8e-10 68.2 77 48.1
Sed0017409 Sechium edule HOM05D001588 ORTHO05D006118 5.0e-10 67.8 110 39.1
PGSC0003DMG400005820 Solanum tuberosum HOM05D001588 ORTHO05D006118 3.2e-09 65.1 87 43.7
HanXRQChr15g0469581 Helianthus annuus HOM05D001588 ORTHO05D006118 5.5e-09 64.3 51 66.7
Nitab4.5_0004836g0070 Nicotiana tabacum HOM05D001588 ORTHO05D006118 6.1e-08 60.8 59 55.9
Cre06.g278101 Chlamydomonas reinhardtii HOM05D001588 ORTHO05D006118 2.6e-06 55.5 80 40.0


User provided reference genes

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