Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.4e-201 706.1 359 100.0
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 5.6e-89 332.0 329 59.9
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 1.0e-82 311.2 254 65.7
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 4.0e-79 299.3 271 63.1
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 2.3e-74 283.5 253 60.5
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 1.5e-73 280.8 275 58.5
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 2.5e-73 280.0 253 60.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 2.5e-73 280.0 281 57.7
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 3.3e-73 279.6 253 58.9
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 3.3e-73 279.6 254 61.4
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 7.3e-73 278.5 253 60.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 9.5e-73 278.1 253 58.5
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 9.5e-73 278.1 253 58.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 9.5e-73 278.1 253 60.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.6e-72 277.3 254 60.2
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 6.2e-72 275.4 253 57.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 8.1e-72 275.0 253 59.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 8.1e-72 275.0 253 60.5
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 8.1e-72 275.0 257 57.6
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 1.4e-71 274.2 281 55.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 2.4e-71 273.5 254 59.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 2.4e-71 273.5 291 54.0
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 5.2e-71 272.3 254 58.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 5.2e-71 272.3 254 58.3
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 1.5e-70 270.8 293 53.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.5e-70 270.8 292 53.1
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 3.4e-70 269.6 253 58.1
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 4.4e-70 269.2 293 53.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 5.8e-70 268.9 260 56.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 5.8e-70 268.9 256 56.2
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.8e-70 268.9 256 60.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 7.6e-70 268.5 256 57.4
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 7.6e-70 268.5 254 58.3
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 9.9e-70 268.1 303 53.1
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.3e-69 267.7 281 56.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.3e-69 267.7 281 56.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 1.7e-69 267.3 282 53.5
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 1.7e-69 267.3 256 57.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 1.7e-69 267.3 252 57.5
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 2.2e-69 266.9 292 54.8
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 2.2e-69 266.9 293 53.6
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 2.2e-69 266.9 256 56.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 2.2e-69 266.9 252 59.1
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 2.9e-69 266.5 256 58.2
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 2.9e-69 266.5 252 57.5
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 2.9e-69 266.5 257 56.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.9e-69 266.5 253 58.9
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 2.9e-69 266.5 292 53.1
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 2.9e-69 266.5 304 53.0
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 3.8e-69 266.2 254 58.3
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 3.8e-69 266.2 281 55.9
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 3.8e-69 266.2 304 52.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 4.9e-69 265.8 256 58.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 4.9e-69 265.8 252 58.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 6.4e-69 265.4 302 52.6
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 8.4e-69 265.0 252 57.1
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 8.4e-69 265.0 254 59.1
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 1.1e-68 264.6 255 57.3
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 1.1e-68 264.6 261 56.7
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 1.1e-68 264.6 291 53.3
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 1.1e-68 264.6 254 59.1
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.4e-68 264.2 261 56.3
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.4e-68 264.2 253 58.5
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.4e-68 264.2 253 58.5
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 1.4e-68 264.2 304 51.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 1.9e-68 263.8 271 55.7
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.9e-68 263.8 278 54.7
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 1.9e-68 263.8 288 53.1
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 2.4e-68 263.5 280 55.0
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.4e-68 263.5 271 55.7
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 2.4e-68 263.5 280 56.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.2e-68 263.1 271 55.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 3.2e-68 263.1 261 56.3
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 4.2e-68 262.7 252 57.1
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 5.4e-68 262.3 253 59.7
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 5.4e-68 262.3 288 54.2
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 5.4e-68 262.3 257 56.4
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 7.1e-68 261.9 252 56.3
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 7.1e-68 261.9 270 55.9
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 1.6e-67 260.8 274 55.1
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 3.5e-67 259.6 303 52.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 6.0e-67 258.8 257 55.3
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 1.0e-66 258.1 293 52.9
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.0e-66 258.1 255 56.5
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.3e-66 257.7 302 51.7
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.7e-66 257.3 278 54.7
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 2.3e-66 256.9 255 56.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 5.1e-66 255.8 253 55.3
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 5.1e-66 255.8 253 55.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 6.6e-66 255.4 248 58.1
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 1.1e-65 254.6 245 57.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 3.3e-65 253.1 292 53.4
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 3.3e-65 253.1 285 51.2
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 7.3e-65 251.9 254 55.5
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 7.3e-65 251.9 254 55.5
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 9.6e-65 251.5 260 55.0
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 9.6e-65 251.5 253 55.3
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 9.6e-65 251.5 290 51.4
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 1.6e-64 250.8 307 49.2
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 2.1e-64 250.4 310 50.3
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 3.6e-64 249.6 274 55.1
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.4e-63 247.7 269 52.4
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 2.4e-63 246.9 262 54.6
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.1e-63 246.5 261 54.4
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 1.2e-62 244.6 270 52.2
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.6e-62 243.4 251 55.8
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.4e-62 243.0 323 47.7
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.8e-62 242.3 252 55.2
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 5.8e-62 242.3 252 55.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 7.6e-62 241.9 253 55.3
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 1.3e-61 241.1 275 50.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 1.7e-61 240.7 253 55.3
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.7e-61 240.7 253 54.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 1.7e-61 240.7 281 50.5
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 2.2e-61 240.4 252 54.8
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.2e-61 240.4 295 50.8
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 4.9e-61 239.2 295 50.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 8.4e-61 238.4 248 55.6
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 8.4e-61 238.4 301 46.5
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 1.9e-60 237.3 252 54.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.4e-60 236.9 229 57.6
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 4.2e-60 236.1 252 54.4
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 1.6e-59 234.2 262 51.9
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.3e-58 231.1 238 55.9
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.0e-58 229.9 293 49.1
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.9e-57 227.3 246 55.7
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.5e-57 226.9 264 51.5
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 4.3e-57 226.1 252 51.6
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 1.3e-56 224.6 299 47.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 4.5e-54 216.1 311 45.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 5.4e-52 209.1 246 49.2
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 6.0e-51 205.7 288 47.6
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 6.7e-50 202.2 195 57.4
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.9e-49 200.7 220 52.3
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.5e-49 200.3 249 45.8
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.4e-47 193.7 188 58.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.1e-47 193.4 244 47.1
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.3e-45 188.0 268 44.4
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.4e-44 184.5 245 45.3
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 7.9e-43 178.7 286 40.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.8e-42 177.6 263 40.3
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.3e-42 177.2 287 41.8
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.1e-42 176.0 250 40.4
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.3e-40 171.4 259 42.5
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 4.0e-39 166.4 281 38.4
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 9.0e-39 165.2 277 38.6
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.7e-35 153.7 252 39.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-32 144.8 179 44.7
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.3e-32 144.8 185 45.9
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.2e-32 144.1 177 44.6
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.8e-32 143.7 310 35.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 6.9e-31 139.0 292 37.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 9.0e-31 138.7 116 62.1
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.0e-26 125.2 270 31.9
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.5e-25 120.6 280 35.7
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 2.4e-23 114.0 126 52.4
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.0e-22 110.9 287 31.0
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 4.5e-22 109.8 134 50.7
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.0e-21 108.6 256 31.6
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 3.1e-15 87.0 181 33.1
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 7.7e-14 82.4 75 65.3
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.9e-12 77.8 165 34.5
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 2.4e-07 60.8 70 57.1
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 2.6e-06 57.4 72 51.4


User provided reference genes

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