Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0102561 Helianthus annuus HOM05D003633 ORTHO05D004245 3.3e-95 351.7 173 100.0
HanXRQChr05g0143751 Helianthus annuus HOM05D003633 ORTHO05D004245 7.6e-84 313.9 158 98.7
HanXRQChr06g0181541 Helianthus annuus HOM05D003633 ORTHO05D004245 9.6e-63 243.8 151 81.5
Lsat_1_v5_gn_2_27520 Lactuca sativa HOM05D003633 ORTHO05D004245 1.5e-60 236.5 152 77.6
ECA238G1454 Erigeron canadensis HOM05D003633 ORTHO05D004245 2.0e-60 236.1 151 78.8
Oeu058179.1 Olea europaea HOM05D003633 ORTHO05D004245 1.1e-53 213.8 144 70.8
TAR636G3505 Trochodendron aralioides HOM05D003633 ORTHO05D004245 5.3e-53 211.5 159 66.7
Dinv32833 Davidia involucrata HOM05D003633 ORTHO05D004245 6.9e-53 211.1 144 71.5
Manes.06G005500 Manihot esculenta HOM05D003633 ORTHO05D004245 6.9e-53 211.1 144 72.2
Hma1.2p1_0218F.1_g092340 Hydrangea macrophylla HOM05D003633 ORTHO05D004245 2.0e-52 209.5 144 70.8
GSVIVG01033181001 Vitis vinifera HOM05D003633 ORTHO05D004245 4.5e-52 208.4 144 70.1
CDE06G2316 Ceratophyllum demersum HOM05D003633 ORTHO05D004245 1.3e-51 206.8 144 68.1
MELO3C014687.2 Cucumis melo HOM05D003633 ORTHO05D004245 1.7e-51 206.5 144 70.1
MD11G1177700 Malus domestica HOM05D003633 ORTHO05D004245 1.7e-51 206.5 144 69.4
CsaV3_4G023280 Cucumis sativus L. HOM05D003633 ORTHO05D004245 2.2e-51 206.1 144 69.4
Solyc06g073780.4 Solanum lycopersicum HOM05D003633 ORTHO05D004245 5.0e-51 204.9 143 69.2
MD03G1161700 Malus domestica HOM05D003633 ORTHO05D004245 1.4e-50 203.4 144 68.1
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 2.5e-50 202.6 144 68.8
Rhsim01G0197900 Rhododendron simsii HOM05D003633 ORTHO05D004245 3.2e-50 202.2 144 69.4
Aqoxy7G01992 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 5.5e-50 201.4 143 68.5
Nitab4.5_0000271g0010 Nicotiana tabacum HOM05D003633 ORTHO05D004245 5.5e-50 201.4 143 68.5
Nitab4.5_0003359g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 5.5e-50 201.4 143 68.5
Sc12g0000470 Simmondsia chinensis HOM05D003633 ORTHO05D004245 7.1e-50 201.1 143 67.1
Sopen06g030180 Solanum pennellii HOM05D003633 ORTHO05D004245 7.1e-50 201.1 143 67.8
arahy.Tifrunner.gnm1.ann1.HKS14U Arachis hypogaea HOM05D003633 ORTHO05D004245 1.6e-49 199.9 144 65.3
Haze_23622 Corylus avellana HOM05D003633 ORTHO05D004245 2.1e-49 199.5 156 62.2
Phvul.009G196800 Phaseolus vulgaris HOM05D003633 ORTHO05D004245 2.1e-49 199.5 144 66.7
Lj2C854G2 Lonicera japonica HOM05D003633 ORTHO05D004245 2.7e-49 199.1 144 68.1
Sed0007253 Sechium edule HOM05D003633 ORTHO05D004245 3.5e-49 198.7 144 66.7
ClCG02G024050 Citrullus lanatus HOM05D003633 ORTHO05D004245 4.6e-49 198.4 144 68.1
LjContig00564g0017285 Lotus japonicus HOM05D003633 ORTHO05D004245 4.6e-49 198.4 144 65.3
ATR0618G390 Amborella trichopoda HOM05D003633 ORTHO05D004245 6.1e-49 198.0 145 66.9
Migut.N02425 Erythranthe guttata HOM05D003633 ORTHO05D004245 6.1e-49 198.0 151 63.6
SalBow3G2138 Salvia bowleyana HOM05D003633 ORTHO05D004245 7.9e-49 197.6 145 66.2
CiPaw.13G125200 Carya illinoinensis HOM05D003633 ORTHO05D004245 1.0e-48 197.2 144 64.6
FAN13G1182 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.0e-48 197.2 146 65.8
Ciclev10027700m.g Citrus clementina HOM05D003633 ORTHO05D004245 1.8e-48 196.4 144 67.4
Potri.009G155200 Populus trichocarpa HOM05D003633 ORTHO05D004245 1.8e-48 196.4 144 67.4
FAN04G2246 Fragaria x ananassa HOM05D003633 ORTHO05D004245 3.0e-48 195.7 146 65.1
FAN08G3150 Fragaria x ananassa HOM05D003633 ORTHO05D004245 3.0e-48 195.7 146 65.1
FAN18G2517 Fragaria x ananassa HOM05D003633 ORTHO05D004245 3.0e-48 195.7 146 65.1
FAN18G4241 Fragaria x ananassa HOM05D003633 ORTHO05D004245 3.0e-48 195.7 146 65.1
Lalb_Chr04g0249831 Lupinus albus HOM05D003633 ORTHO05D004245 3.0e-48 195.7 143 65.0
Hund18817 Selenicereus undatus HOM05D003633 ORTHO05D004245 3.0e-48 195.7 144 63.9
PGR119G0283 Punica granatum HOM05D003633 ORTHO05D004245 5.1e-48 194.9 144 63.9
Cpa.g.sc103.58 Carica papaya HOM05D003633 ORTHO05D004245 6.7e-48 194.5 143 67.1
MBI05_g07506_MAGBIO Magnolia biondii HOM05D003633 ORTHO05D004245 6.7e-48 194.5 144 63.9
Sabra09G0121700 Salix brachista HOM05D003633 ORTHO05D004245 1.5e-47 193.4 144 66.7
TWI75G0107 Tripterygium wilfordii HOM05D003633 ORTHO05D004245 1.9e-47 193.0 143 67.1
Eucgr.J00601 Eucalyptus grandis HOM05D003633 ORTHO05D004245 2.5e-47 192.6 144 65.3
Lsat_1_v5_gn_2_27661 Lactuca sativa HOM05D003633 ORTHO05D004245 2.5e-47 192.6 153 64.7
TPR.G13308 Trifolium pratense HOM05D003633 ORTHO05D004245 2.5e-47 192.6 144 64.6
PSO170G6842 Papaver somniferum HOM05D003633 ORTHO05D004245 4.3e-47 191.8 143 62.9
Actinidia06352 Actinidia chinensis HOM05D003633 ORTHO05D004245 7.4e-47 191.0 126 73.8
vmacro21588 Vaccinium macrocarpon HOM05D003633 ORTHO05D004245 7.4e-47 191.0 136 69.1
Atru.chr3.3038 Acer truncatum HOM05D003633 ORTHO05D004245 9.7e-47 190.7 144 66.0
CANSAT54G1723 Cannabis sativa HOM05D003633 ORTHO05D004245 1.6e-46 189.9 143 63.6
AUR62020192 Chenopodium quinoa HOM05D003633 ORTHO05D004245 1.6e-46 189.9 146 61.0
SGA_v2.0_scaffold79G25491 Striga asiatica HOM05D003633 ORTHO05D004245 1.6e-46 189.9 143 62.9
TPR.G1242 Trifolium pratense HOM05D003633 ORTHO05D004245 2.8e-46 189.1 152 59.2
AUR62001588 Chenopodium quinoa HOM05D003633 ORTHO05D004245 3.7e-46 188.7 146 60.3
FvH4_5g11061 Fragaria vesca HOM05D003633 ORTHO05D004245 3.7e-46 188.7 146 63.0
Actinidia22465 Actinidia chinensis HOM05D003633 ORTHO05D004245 8.2e-46 187.6 124 73.4
Gohir.D05G079700 Gossypium hirsutum HOM05D003633 ORTHO05D004245 4.1e-45 185.3 122 73.8
Gorai.009G081300 Gossypium raimondii HOM05D003633 ORTHO05D004245 4.1e-45 185.3 122 73.8
arahy.Tifrunner.gnm1.ann1.65YTHF Arachis hypogaea HOM05D003633 ORTHO05D004245 5.3e-45 184.9 123 70.7
arahy.Tifrunner.gnm1.ann1.Z8K404 Arachis hypogaea HOM05D003633 ORTHO05D004245 5.3e-45 184.9 123 70.7
Duzib170G1043 Durio zibethinus HOM05D003633 ORTHO05D004245 5.3e-45 184.9 124 72.6
Glyma.14G044900 Glycine max HOM05D003633 ORTHO05D004245 5.3e-45 184.9 123 71.5
Thecc.09G266900 Theobroma cacao HOM05D003633 ORTHO05D004245 6.9e-45 184.5 122 73.8
EL10Ac7g16251 Beta vulgaris HOM05D003633 ORTHO05D004245 9.0e-45 184.1 144 61.8
Prupe.6G149900 Prunus persica HOM05D003633 ORTHO05D004245 9.0e-45 184.1 124 71.0
RcHm_v2.0_Chr1g0362081 Rosa chinensis HOM05D003633 ORTHO05D004245 9.0e-45 184.1 144 61.1
Ah.08g222470 Amaranthus hybridus HOM05D003633 ORTHO05D004245 1.5e-44 183.3 144 60.4
Glyma.02G271900 Glycine max HOM05D003633 ORTHO05D004245 1.5e-44 183.3 123 70.7
Gohir.A05G076900 Gossypium hirsutum HOM05D003633 ORTHO05D004245 1.5e-44 183.3 121 73.6
BcaB01g03052 Brassica carinata HOM05D003633 ORTHO05D004245 2.0e-44 183.0 151 57.0
LjContig00564g0013149 Lotus japonicus HOM05D003633 ORTHO05D004245 3.4e-44 182.2 144 59.7
Nn2g11908 Nelumbo nucifera HOM05D003633 ORTHO05D004245 1.0e-43 180.6 125 69.6
HPP92_021489 Vanilla planifolia HOM05D003633 ORTHO05D004245 1.0e-43 180.6 143 60.1
Migut.N02426 Erythranthe guttata HOM05D003633 ORTHO05D004245 1.3e-43 180.3 151 58.3
CSS0028100 Camellia sinensis var. sinensis HOM05D003633 ORTHO05D004245 1.7e-43 179.9 124 71.0
Cc01_g08340 Coffea canephora HOM05D003633 ORTHO05D004245 1.7e-43 179.9 127 68.5
arahy.Tifrunner.gnm1.ann1.KL7BWI Arachis hypogaea HOM05D003633 ORTHO05D004245 2.2e-43 179.5 123 69.1
Peaxi162Scf00355g00113 Petunia axillaris HOM05D003633 ORTHO05D004245 2.9e-43 179.1 186 51.6
PSO017G3356 Papaver somniferum HOM05D003633 ORTHO05D004245 3.8e-43 178.7 143 60.1
Ca_06129_v3 Cicer arietinum L. HOM05D003633 ORTHO05D004245 1.1e-42 177.2 152 57.9
Mapoly0048s0100 Marchantia polymorpha HOM05D003633 ORTHO05D004245 1.9e-42 176.4 144 56.9
RcHm_v2.0_Chr7g0186731 Rosa chinensis HOM05D003633 ORTHO05D004245 3.2e-42 175.6 121 68.6
Psat2g023680 Pisum sativum HOM05D003633 ORTHO05D004245 7.2e-42 174.5 123 67.5
COL.COLO4_25352 Corchorus olitorius HOM05D003633 ORTHO05D004245 9.4e-42 174.1 119 68.9
THA.LOC104800499 Tarenaya hassleriana HOM05D003633 ORTHO05D004245 9.4e-42 174.1 119 68.9
AT2G27170 Arabidopsis thaliana HOM05D003633 ORTHO05D004245 2.7e-41 172.6 141 58.2
Medtr1g051825 Medicago truncatula HOM05D003633 ORTHO05D004245 2.7e-41 172.6 123 67.5
AagrBONN_evm.TU.Sc2ySwM_228.640 Anthoceros agrestis HOM05D003633 ORTHO05D004245 4.6e-41 171.8 150 56.7
unitig_27.g25129 Utricularia gibba HOM05D003633 ORTHO05D004245 1.0e-40 170.6 148 58.1
Nitab4.5_0007575g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 1.4e-40 170.2 143 58.7
Pp3c24_13420 Physcomitrium patens HOM05D003633 ORTHO05D004245 3.0e-40 169.1 146 52.7
AL4G20920 Arabidopsis lyrata HOM05D003633 ORTHO05D004245 3.9e-40 168.7 141 56.7
VMungo1309G0828 Vigna mungo HOM05D003633 ORTHO05D004245 3.9e-40 168.7 112 71.4
Zm00001eb297550 Zea mays HOM05D003633 ORTHO05D004245 6.7e-40 167.9 142 55.6
Carub.0004s0770 Capsella rubella HOM05D003633 ORTHO05D004245 4.3e-39 165.2 143 55.2
CBR_g39806 Chara braunii HOM05D003633 ORTHO05D004245 5.7e-39 164.9 144 53.5
Thhalv10001887m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 1.7e-38 163.3 116 65.5
BcaB06g28118 Brassica carinata HOM05D003633 ORTHO05D004245 2.8e-38 162.5 115 65.2
BcaC02g08276 Brassica carinata HOM05D003633 ORTHO05D004245 1.4e-37 160.2 115 63.5
A03p26730 Brassica napus HOM05D003633 ORTHO05D004245 1.4e-37 160.2 117 63.2
A04p20650 Brassica napus HOM05D003633 ORTHO05D004245 1.4e-37 160.2 115 63.5
C04p56430 Brassica napus HOM05D003633 ORTHO05D004245 1.4e-37 160.2 115 63.5
BolC4t27174H Brassica oleracea HOM05D003633 ORTHO05D004245 1.4e-37 160.2 115 63.5
BraA03t11884Z Brassica rapa HOM05D003633 ORTHO05D004245 1.4e-37 160.2 117 63.2
BraA04t17638Z Brassica rapa HOM05D003633 ORTHO05D004245 1.4e-37 160.2 115 63.5
Sp4g09970 Schrenkiella parvula HOM05D003633 ORTHO05D004245 1.4e-37 160.2 116 63.8
BcaC01g04925 Brassica carinata HOM05D003633 ORTHO05D004245 2.4e-37 159.5 117 63.2
BolC3t15547H Brassica oleracea HOM05D003633 ORTHO05D004245 2.4e-37 159.5 117 63.2
Aa31LG5G8590 Aethionema arabicum HOM05D003633 ORTHO05D004245 3.1e-37 159.1 117 64.1
CARHR119550 Cardamine hirsuta HOM05D003633 ORTHO05D004245 4.1e-37 158.7 142 54.2
Thhalv10023124m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 5.3e-37 158.3 150 52.7
Lj2C874G5 Lonicera japonica HOM05D003633 ORTHO05D004245 2.0e-36 156.4 144 56.2
Nitab4.5_0000200g0070 Nicotiana tabacum HOM05D003633 ORTHO05D004245 2.1e-33 146.4 143 52.4
PRCOL_00007015 Prasinoderma coloniale HOM05D003633 ORTHO05D004245 3.6e-33 145.6 142 46.5
Lj2C853G1 Lonicera japonica HOM05D003633 ORTHO05D004245 1.3e-30 137.1 149 49.7
Lj2C873G2 Lonicera japonica HOM05D003633 ORTHO05D004245 6.3e-30 134.8 149 49.0
C03p32030 Brassica napus HOM05D003633 ORTHO05D004245 8.2e-30 134.4 117 55.6
Lj2A868G26 Lonicera japonica HOM05D003633 ORTHO05D004245 2.4e-29 132.9 149 49.0
Cfa023768 Carpinus fangiana HOM05D003633 ORTHO05D004245 1.9e-26 123.2 142 41.5
MCO04G096 Micromonas commoda HOM05D003633 ORTHO05D004245 1.5e-23 113.6 138 37.0
Lj2A851G15 Lonicera japonica HOM05D003633 ORTHO05D004245 2.6e-20 102.8 145 42.1
SHI25312 Sapria himalayana HOM05D003633 ORTHO05D004245 5.9e-20 101.7 144 40.3
HPP92_021530 Vanilla planifolia HOM05D003633 ORTHO05D004245 5.9e-20 101.7 143 39.9
Medtr3g110058 Medicago truncatula HOM05D003633 ORTHO05D004245 1.3e-19 100.5 151 39.7
Lsat_1_v5_gn_6_60940 Lactuca sativa HOM05D003633 ORTHO05D004245 4.4e-15 85.5 114 39.5
Cre10.g445650 Chlamydomonas reinhardtii HOM05D003633 ORTHO05D004245 1.8e-13 80.1 123 35.8
Aqoxy2G02431 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 1.9e-10 70.1 112 38.4
arahy.Tifrunner.gnm1.ann1.10ENSP Arachis hypogaea HOM05D003633 ORTHO05D004245 1.2e-09 67.4 42 71.4


User provided reference genes

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