Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 3.5e-91 338.2 161 100.0
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 1.4e-71 273.1 164 78.0
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 1.5e-54 216.5 163 65.6
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 9.9e-54 213.8 159 62.3
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 1.3e-53 213.4 159 65.4
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 1.7e-53 213.0 167 62.3
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 2.9e-53 212.2 165 63.0
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 2.9e-53 212.2 167 62.3
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 2.4e-52 209.1 167 61.1
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 2.4e-52 209.1 161 63.4
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 3.2e-52 208.8 163 60.7
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.6e-51 206.5 160 64.4
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 1.6e-51 206.5 165 62.4
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 2.1e-51 206.1 168 61.3
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 2.7e-51 205.7 162 59.9
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 3.5e-51 205.3 165 59.4
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 4.6e-51 204.9 164 63.4
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 7.9e-51 204.1 162 61.1
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 2.3e-50 202.6 162 58.0
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 2.3e-50 202.6 165 60.6
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 3.9e-50 201.8 159 61.6
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 3.9e-50 201.8 162 60.5
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 6.7e-50 201.1 167 59.3
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 6.7e-50 201.1 163 60.7
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 6.7e-50 201.1 161 60.9
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 6.7e-50 201.1 161 62.7
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 1.1e-49 200.3 157 60.5
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 1.5e-49 199.9 160 60.0
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 2.5e-49 199.1 161 60.2
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.3e-49 198.7 160 59.4
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 3.3e-49 198.7 160 59.4
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 3.3e-49 198.7 164 59.8
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 3.3e-49 198.7 158 59.5
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 5.6e-49 198.0 161 60.2
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 1.6e-48 196.4 165 57.6
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 2.1e-48 196.1 165 57.6
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 2.8e-48 195.7 166 59.6
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 6.2e-48 194.5 165 57.0
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 8.1e-48 194.1 161 59.0
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 8.1e-48 194.1 164 57.3
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 3.1e-47 192.2 157 58.6
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 3.1e-47 192.2 195 51.3
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 5.3e-47 191.4 163 57.7
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 1.2e-46 190.3 157 56.7
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 2.0e-46 189.5 163 58.9
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 5.8e-46 188.0 167 56.3
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 5.8e-46 188.0 157 56.7
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 7.6e-46 187.6 163 57.1
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 4.9e-45 184.9 162 56.2
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 6.4e-45 184.5 164 56.7
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 9.3e-44 180.6 155 56.8
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 3.0e-42 175.6 134 64.2
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 3.0e-42 175.6 159 56.0
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 8.7e-42 174.1 133 61.7
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 4.3e-41 171.8 165 54.5
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 5.6e-41 171.4 158 54.4
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 5.6e-41 171.4 166 54.8
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 7.4e-41 171.0 132 60.6
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 9.6e-41 170.6 137 59.9
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 3.7e-40 168.7 113 68.1
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 4.8e-40 168.3 139 57.6
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 8.2e-40 167.5 135 59.3
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 3.1e-39 165.6 131 63.4
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 5.3e-39 164.9 139 60.4
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 9.0e-39 164.1 128 64.1
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 8.4e-37 157.5 133 57.1
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 2.5e-36 156.0 187 45.5
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 2.5e-36 156.0 177 44.6
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 1.2e-35 153.7 124 58.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.3e-32 143.7 130 54.6
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 1.7e-29 133.3 96 60.4
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 2.9e-29 132.5 161 45.3
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 2.5e-28 129.4 108 53.7
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.2e-27 127.1 159 44.7
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 3.0e-26 122.5 82 76.8
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 6.7e-26 121.3 82 64.6
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 1.7e-24 116.7 175 32.6
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 2.2e-24 116.3 82 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 4.5e-22 108.6 188 31.4
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 3.1e-15 85.9 81 53.1
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 4.1e-07 58.9 110 31.8
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.6e-06 57.0 147 26.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.5e-06 55.8 146 26.0
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.5e-06 55.5 142 27.5
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.5e-06 55.5 142 27.5


User provided reference genes

Program Settings