Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.1e-166 589.0 298 100.0
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 3.3e-79 299.3 178 86.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.8e-62 243.0 181 71.8
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-58 231.1 124 95.2
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.7e-57 226.5 124 92.7
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.6e-57 226.1 124 91.1
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 3.6e-57 226.1 124 92.7
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 4.7e-57 225.7 124 91.1
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 6.1e-57 225.3 155 75.5
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.0e-57 224.9 130 86.9
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.0e-56 224.6 124 91.1
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-56 224.6 121 92.6
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.8e-56 223.8 124 91.1
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.3e-56 223.4 124 90.3
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.3e-56 223.4 124 89.5
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.3e-56 223.4 124 89.5
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 4.0e-56 222.6 132 84.1
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 4.0e-56 222.6 124 90.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 5.2e-56 222.2 122 90.2
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 5.2e-56 222.2 124 90.3
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 8.8e-56 221.5 124 90.3
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 8.8e-56 221.5 124 89.5
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 8.8e-56 221.5 124 90.3
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.8e-56 221.5 124 88.7
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 8.8e-56 221.5 124 88.7
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.0e-55 220.3 124 89.5
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-55 220.3 122 89.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.6e-55 219.9 136 83.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 4.4e-55 219.2 124 89.5
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-55 219.2 121 89.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-55 219.2 121 89.3
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 7.5e-55 218.4 124 88.7
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 7.5e-55 218.4 124 88.7
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 9.7e-55 218.0 124 87.9
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-55 218.0 121 88.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 9.7e-55 218.0 122 87.7
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 9.7e-55 218.0 124 87.1
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.3e-54 217.6 124 87.1
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.3e-54 217.6 124 88.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.7e-54 217.2 136 83.1
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.2e-54 216.9 122 88.5
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.7e-54 216.1 124 87.1
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.7e-54 216.1 122 88.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.8e-54 215.7 124 89.5
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 6.3e-54 215.3 124 87.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.2e-54 214.9 124 86.3
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.2e-54 214.9 124 86.3
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.1e-53 214.5 124 86.3
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.4e-53 214.2 124 85.5
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-53 214.2 121 88.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.8e-53 213.8 124 85.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.8e-53 213.8 133 81.2
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.4e-53 213.4 131 83.2
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.4e-53 213.4 131 83.2
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.4e-53 213.4 131 83.2
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.4e-53 213.4 122 85.2
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-53 213.4 131 83.2
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.1e-53 213.0 124 87.1
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 4.1e-53 212.6 134 80.6
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 4.1e-53 212.6 124 84.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 4.1e-53 212.6 124 84.7
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.1e-53 212.6 131 83.2
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 5.3e-53 212.2 124 85.5
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 5.3e-53 212.2 124 85.5
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.7e-52 209.9 124 85.5
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.7e-52 209.9 131 81.7
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 2.7e-52 209.9 125 86.4
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.7e-52 209.9 141 78.0
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.7e-52 209.9 124 86.3
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.0e-51 208.0 137 78.8
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.3e-51 207.6 124 83.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.7e-51 207.2 124 84.7
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.7e-51 207.2 124 83.9
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-51 206.8 132 81.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.8e-51 206.1 147 75.5
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 5.0e-51 205.7 124 82.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 6.5e-51 205.3 124 82.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 8.5e-51 204.9 132 82.6
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 8.5e-51 204.9 171 65.5
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.1e-50 204.5 124 82.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.5e-50 204.1 124 81.5
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.5e-50 204.1 122 82.0
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.5e-50 203.4 124 79.8
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.5e-50 203.4 124 81.5
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.5e-50 203.4 114 87.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 4.2e-50 202.6 124 81.5
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.2e-50 202.6 124 81.5
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 4.2e-50 202.6 124 82.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 4.2e-50 202.6 124 82.3
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.2e-50 201.8 124 82.3
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 7.2e-50 201.8 124 80.6
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 9.4e-50 201.4 124 80.6
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 9.4e-50 201.4 122 82.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-49 201.1 148 73.0
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.6e-49 200.7 124 80.6
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-49 200.7 124 81.5
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.6e-49 200.7 124 81.5
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-49 200.7 148 73.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-49 200.7 148 73.0
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.6e-49 200.7 124 81.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 3.6e-49 199.5 124 80.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.7e-49 199.1 124 81.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 6.1e-49 198.7 124 81.5
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.0e-49 198.4 122 81.1
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.0e-49 198.4 124 80.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.0e-48 198.0 124 80.6
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.4e-48 197.6 125 81.6
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.4e-48 197.6 191 60.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.8e-48 197.2 124 77.4
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.0e-48 196.4 122 80.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.5e-47 194.1 104 94.2
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-47 194.1 104 92.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.6e-47 193.4 104 92.3
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 3.4e-47 193.0 124 77.4
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.4e-47 193.0 104 91.3
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.4e-47 192.6 145 70.3
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.7e-47 192.2 115 82.6
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 5.7e-47 192.2 124 74.2
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 5.7e-47 192.2 124 76.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 9.8e-47 191.4 122 78.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.7e-46 190.7 122 77.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.2e-46 190.3 120 77.5
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 3.7e-46 189.5 121 76.0
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 6.3e-46 188.7 98 96.9
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.4e-45 186.8 122 73.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.1e-45 186.4 103 88.3
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.2e-44 184.5 98 92.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.5e-44 182.6 103 87.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.7e-44 181.8 123 70.7
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.5e-42 176.8 104 83.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-42 176.8 109 80.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.5e-42 175.6 117 76.1
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.2e-42 175.3 123 69.1
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.6e-41 174.1 195 53.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.1e-41 173.7 104 80.8
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.7e-41 172.6 116 70.7
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 6.1e-41 172.2 90 93.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 6.8e-40 168.7 104 78.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 2.0e-39 167.2 103 79.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.4e-37 161.0 130 66.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.4e-37 160.2 129 69.8
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.9e-35 153.3 103 76.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.9e-35 153.3 89 84.3
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.1e-34 151.4 81 87.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 5.6e-34 149.1 79 89.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 7.3e-34 148.7 83 91.6
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.2e-31 141.4 110 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.0e-27 128.3 94 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.3e-27 127.1 99 62.6
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-26 124.0 73 87.7
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.3e-26 122.1 82 73.2
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 7.3e-26 122.1 103 63.1
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-21 107.8 74 71.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.5e-18 97.1 64 73.4
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-16 91.3 65 70.8
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.6e-15 87.0 45 86.7
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 7.5e-15 85.5 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 7.5e-15 85.5 49 87.8
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 4.1e-13 79.7 114 40.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.7e-12 77.0 111 38.7
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-12 77.0 108 47.2
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 8.6e-11 72.0 110 38.2


User provided reference genes

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