Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 0.0e+00 1827.4 919 100.0
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 0.0e+00 1309.7 920 75.4
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 0.0e+00 1289.2 915 73.1
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 0.0e+00 1162.1 891 70.5
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.8e-269 932.9 966 55.1
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 2.6e-268 929.1 929 56.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 4.4e-263 911.8 964 53.2
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 7.0e-261 904.4 951 54.3
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.7e-259 899.8 940 53.4
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 9.4e-258 894.0 936 54.2
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.6e-257 892.1 934 54.0
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.4e-256 890.2 933 53.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 6.7e-256 887.9 974 52.9
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.5e-255 886.7 971 51.6
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 7.5e-255 884.4 946 52.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.3e-254 883.6 949 52.7
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 6.3e-254 881.3 973 52.9
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 8.2e-254 880.9 942 53.4
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 2.4e-253 879.4 992 51.4
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 3.5e-252 875.5 936 52.2
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.3e-251 873.6 970 51.5
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 2.2e-251 872.8 934 53.4
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.2e-250 869.0 965 51.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 3.2e-250 869.0 971 51.2
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 4.2e-250 868.6 958 52.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 6.1e-249 864.8 942 52.8
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.0e-248 862.4 955 52.8
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.5e-247 860.1 958 51.9
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 2.6e-247 859.4 909 55.4
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.5e-247 857.8 966 51.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.8e-246 855.9 966 52.3
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.3e-246 854.7 969 52.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 6.3e-246 854.7 969 52.1
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 8.3e-246 854.4 981 50.6
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 8.3e-246 854.4 775 58.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 8.3e-246 854.4 971 52.3
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 8.3e-246 854.4 945 51.9
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.8e-245 853.2 969 50.8
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.6e-244 850.1 976 51.2
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 3.5e-244 849.0 939 52.4
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.7e-244 847.8 953 52.3
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 2.3e-243 846.3 943 51.2
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 2.9e-243 845.9 968 51.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 5.0e-243 845.1 968 50.9
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 5.0e-243 845.1 943 52.5
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.1e-242 844.0 966 50.7
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.9e-242 843.2 963 51.0
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.9e-242 843.2 954 51.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 8.0e-241 837.8 962 51.0
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 8.0e-241 837.8 957 52.1
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 8.8e-240 834.3 945 51.3
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.2e-239 833.9 955 50.2
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 9.8e-239 830.9 961 51.7
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.7e-238 830.1 962 50.7
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 2.8e-238 829.3 963 51.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 3.7e-238 828.9 943 51.0
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 3.7e-238 828.9 925 51.1
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.4e-237 827.0 934 51.7
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.8e-237 826.6 958 50.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 4.1e-237 825.5 991 49.5
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.9e-234 816.6 946 51.6
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 3.3e-234 815.8 971 50.1
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 3.3e-234 815.8 971 50.1
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 4.3e-234 815.5 945 49.9
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.2e-233 813.9 945 50.3
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.2e-233 813.9 943 50.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 8.0e-233 811.2 945 49.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 8.0e-233 811.2 917 51.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.4e-232 810.4 940 50.3
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 1.4e-232 810.4 948 49.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 5.2e-232 808.5 949 49.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.2e-231 807.4 900 52.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.5e-231 807.0 1021 48.5
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.4e-231 805.4 970 49.8
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.8e-229 800.0 987 49.2
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 9.2e-229 797.7 681 61.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.2e-228 797.3 934 50.0
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.7e-227 793.5 893 50.3
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 3.3e-226 789.3 939 48.5
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.3e-226 788.9 788 54.2
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.3e-224 783.1 966 49.1
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.1e-224 782.7 987 48.7
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 8.9e-224 781.2 933 47.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 8.9e-224 781.2 651 62.4
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.8e-223 778.5 970 49.2
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 7.5e-223 778.1 687 59.7
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.1e-221 774.2 964 47.4
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.1e-221 772.3 968 49.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 9.2e-221 771.2 939 48.1
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-220 770.8 966 49.4
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.7e-220 769.6 820 53.8
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.7e-219 766.9 949 48.1
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 6.6e-219 765.0 953 46.8
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.6e-217 760.4 885 48.5
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 2.8e-217 759.6 958 47.2
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 7.5e-215 751.5 691 57.5
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 3.5e-212 742.7 650 60.0
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.6e-209 733.8 833 50.5
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.6e-207 726.5 956 46.8
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 6.4e-206 721.8 958 45.7
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 7.3e-202 708.4 786 52.3
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 6.2e-201 705.3 793 50.7
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.9e-195 686.0 612 60.6
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.1e-192 676.4 917 46.0
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.5e-191 674.1 929 44.6
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 2.9e-190 669.8 736 49.6
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.2e-183 647.9 656 52.6
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.4e-176 624.4 675 50.5
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-169 601.3 719 49.7
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 9.3e-165 585.1 467 67.0
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.5e-154 551.2 441 63.9
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.0e-154 550.8 863 40.4
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 3.1e-152 543.5 694 45.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 6.1e-148 529.3 696 46.3
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.5e-141 508.1 550 49.5
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.5e-141 507.3 561 49.7
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.1e-140 502.7 669 43.9
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 8.0e-140 502.3 653 44.4
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 4.0e-139 500.0 618 45.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.0e-135 487.6 670 45.4
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.1e-125 455.3 252 91.7
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.1e-124 451.1 654 41.1
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 5.4e-120 436.4 713 41.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.2e-108 398.7 740 35.9
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 4.7e-92 343.6 251 70.1
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.8e-91 341.7 456 43.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 3.1e-91 340.9 287 62.4
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.2e-90 339.0 513 41.9
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 9.2e-88 329.3 531 41.2
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.9e-80 305.1 436 43.3
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.2e-76 290.0 183 76.5
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.7e-71 274.6 195 71.8
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 2.3e-70 271.6 261 58.2
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.1e-63 248.4 175 70.9
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.0e-54 219.5 246 47.2
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.9e-48 198.7 136 73.5
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.2e-48 196.8 142 72.5
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 5.1e-46 190.7 276 45.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 4.3e-45 187.6 173 54.3
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 7.4e-45 186.8 135 68.1
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 9.4e-40 169.9 309 37.5
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.4e-35 155.2 114 64.9
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 9.4e-32 143.3 519 27.4
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 9.1e-27 126.7 199 41.2
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 4.5e-26 124.4 78 76.9
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.0e-18 99.0 297 29.3
ECA240G1112 Erigeron canadensis HOM05D004501 ORTHO05D004944 5.5e-16 90.9 91 54.9
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 4.7e-15 87.8 535 24.3
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 4.0e-14 84.7 93 45.2
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 5.2e-14 84.3 297 32.3
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.2e-12 79.0 42 83.3
Lsat_1_v5_gn_4_145741 Lactuca sativa HOM05D004501 ORTHO05D004944 4.1e-11 74.7 56 69.6
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 9.5e-08 63.5 52 57.7
GSVIVG01006141001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.8e-07 62.0 64 50.0


User provided reference genes

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