Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 0.0e+00 1081.2 754 100.0
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.4e-230 803.5 668 91.0
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.6e-223 780.0 701 87.0
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 7.8e-218 761.1 717 81.6
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 2.7e-202 709.5 672 83.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 9.0e-198 694.5 670 82.2
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.9e-195 686.8 671 81.8
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 8.7e-193 677.9 671 81.4
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.5e-189 667.2 666 81.2
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 2.0e-189 666.8 673 79.8
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 6.4e-188 661.8 677 79.5
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 6.0e-186 655.2 668 79.6
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.8e-185 653.7 661 80.9
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 2.3e-185 653.3 667 80.2
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 2.3e-185 653.3 668 79.9
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 3.0e-185 652.9 671 79.3
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 3.9e-185 652.5 668 78.3
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 1.1e-184 651.0 659 80.3
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 5.6e-184 648.7 666 78.4
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 5.6e-184 648.7 660 80.6
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 9.6e-184 647.9 671 78.4
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 2.1e-183 646.7 667 79.3
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 4.0e-182 642.5 670 78.1
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 6.9e-182 641.7 670 79.4
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 6.9e-182 641.7 670 77.8
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 2.6e-181 639.8 666 79.3
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 2.6e-181 639.8 663 75.6
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 3.4e-181 639.4 677 78.1
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 5.8e-181 638.6 675 75.9
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 7.6e-181 638.3 665 79.2
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.0e-180 637.9 671 77.5
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.3e-180 637.5 669 79.5
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.7e-180 637.1 666 79.0
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 3.8e-180 636.0 669 78.8
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 4.9e-180 635.6 667 78.4
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 4.9e-180 635.6 673 78.5
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 8.4e-180 634.8 670 77.6
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 1.4e-179 634.0 666 77.3
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 1.9e-179 633.6 670 78.4
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 2.5e-179 633.3 669 78.8
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 4.2e-179 632.5 673 78.0
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 7.1e-179 631.7 455 72.3
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 1.6e-178 630.6 674 77.4
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 2.7e-178 629.8 667 77.4
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 3.5e-178 629.4 669 77.4
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 6.0e-178 628.6 685 75.9
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.3e-177 627.5 684 76.0
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 2.3e-177 626.7 671 76.6
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.0e-177 626.3 455 71.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 6.7e-177 625.2 691 77.6
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 8.7e-177 624.8 459 71.2
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 9.7e-176 621.3 471 69.9
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 1.3e-175 620.9 666 76.9
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 2.4e-174 616.7 680 76.5
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.4e-174 616.7 454 70.0
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 1.5e-173 614.0 667 75.9
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.0e-172 611.3 455 69.7
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 4.2e-171 605.9 666 75.2
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 4.6e-170 602.4 669 76.4
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 6.7e-169 598.6 667 76.2
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 1.7e-167 594.0 666 76.7
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 4.8e-167 592.4 666 76.6
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.8e-167 592.4 666 76.7
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 6.9e-166 588.6 666 76.1
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.7e-164 583.9 623 79.0
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.7e-164 583.9 686 73.6
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 3.8e-164 582.8 702 72.6
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-163 581.3 666 75.8
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.9e-163 580.5 666 75.8
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.2e-163 579.3 670 76.1
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 9.4e-163 578.2 669 76.1
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 1.2e-162 577.8 665 76.4
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.6e-162 577.4 669 74.0
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.6e-162 576.2 674 74.6
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 5.7e-160 568.9 666 74.2
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.7e-159 567.4 454 67.4
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 2.2e-159 567.0 666 74.5
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 4.5e-157 559.3 666 73.4
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 5.9e-157 558.9 666 72.8
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 1.0e-156 558.1 666 73.3
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.7e-156 557.4 666 74.5
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 1.4e-155 554.3 666 73.6
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.2e-155 553.1 615 73.8
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 5.5e-155 552.4 665 74.0
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 1.6e-154 550.8 666 74.3
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 4.7e-154 549.3 571 83.0
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.3e-153 547.0 666 70.3
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 3.0e-153 546.6 456 62.7
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 3.9e-153 546.2 457 63.2
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 8.8e-153 545.0 666 61.6
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.5e-152 544.3 665 73.4
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 4.4e-152 542.7 358 78.2
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.8e-151 540.0 722 64.8
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 5.3e-150 535.8 576 53.6
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 2.0e-149 533.9 666 72.5
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 5.9e-149 532.3 666 72.4
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 5.5e-147 525.8 459 63.6
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 3.6e-146 523.1 458 61.4
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.0e-145 521.5 568 81.9
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 8.8e-145 518.5 390 69.5
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.5e-144 517.7 458 61.8
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 1.0e-140 505.0 453 60.3
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 2.5e-139 500.4 439 63.6
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 1.2e-130 471.5 569 75.7
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.7e-124 451.1 666 67.6
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.5e-120 438.0 703 64.3
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 4.6e-117 426.4 470 50.0
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.7e-116 424.5 633 58.0
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 8.6e-116 422.2 355 64.5
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 3.1e-113 413.7 462 50.9
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 3.4e-112 410.2 314 71.0
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.9e-111 407.1 293 75.4
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 8.1e-106 389.0 278 70.9
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.1e-105 388.7 399 52.1
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.4e-86 324.3 669 59.6
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 9.3e-62 242.7 341 46.9
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.3e-60 238.8 193 66.3
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 6.9e-57 226.5 472 32.2
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 6.7e-52 209.9 277 50.9
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 6.7e-52 209.9 139 72.7
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 1.3e-50 205.7 568 47.0
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.8e-50 203.8 164 61.0
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 6.3e-50 203.4 472 31.6
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 5.3e-49 200.3 191 50.8
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 3.4e-48 197.6 143 69.2
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 2.2e-47 194.9 134 73.9
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 1.4e-46 192.2 294 45.9
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 7.9e-45 186.4 155 64.5
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 1.8e-44 185.3 520 29.0
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.5e-38 164.9 124 65.3
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 8.2e-34 149.8 289 36.0
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 1.4e-33 149.1 145 50.3
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.8e-33 148.7 114 67.5
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 9.1e-33 146.4 152 55.9
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 1.6e-29 135.6 290 89.0
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.1e-25 120.9 66 87.9
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 2.3e-20 105.1 521 23.6
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 7.5e-19 100.1 111 48.6
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 1.8e-17 95.5 280 31.4
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.4e-17 95.1 82 62.2
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.6e-16 92.4 73 60.3
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.9e-16 90.5 92 47.8
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.2e-11 76.3 53 73.6
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.6e-11 75.1 49 75.5
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 3.4e-11 74.7 500 23.2
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 4.4e-11 74.3 179 33.0
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 4.9e-10 70.9 50 74.0
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 1.3e-07 62.8 37 75.7
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 8.6e-07 60.1 51 66.7


User provided reference genes

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