Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.6e-230 802.4 386 100.0
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.8e-170 602.8 379 77.0
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 2.4e-170 602.4 380 77.9
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 9.7e-156 553.9 399 67.7
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 1.0e-152 543.9 394 66.2
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 2.2e-152 542.7 393 65.9
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.9e-152 542.3 394 67.0
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.4e-149 533.5 391 66.0
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 3.9e-149 531.9 392 66.3
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 5.7e-148 528.1 387 67.2
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 9.7e-148 527.3 395 64.6
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 1.3e-147 526.9 387 65.6
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.2e-147 526.2 385 66.8
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 2.8e-147 525.8 371 68.7
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 6.3e-147 524.6 393 66.2
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 8.2e-147 524.2 397 64.7
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.1e-146 523.9 393 66.2
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 1.1e-146 523.9 388 65.2
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 2.4e-146 522.7 421 61.3
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 7.0e-146 521.2 388 65.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.5e-145 518.5 387 65.4
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.5e-145 518.5 387 65.4
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.0e-144 517.3 389 65.8
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 1.3e-144 516.9 392 65.6
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.3e-144 516.9 392 65.3
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.2e-144 516.2 388 64.9
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 3.8e-144 515.4 387 65.4
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.0e-144 515.0 388 64.7
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 6.5e-144 514.6 393 64.4
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 8.5e-144 514.2 389 64.5
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.5e-143 513.5 392 65.6
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 1.5e-143 513.5 396 61.9
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 3.2e-143 512.3 393 63.9
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 3.2e-143 512.3 394 62.4
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 3.2e-143 512.3 389 64.3
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.2e-143 511.9 388 64.7
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 9.4e-143 510.8 393 64.1
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.6e-142 510.0 387 64.6
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.7e-142 509.2 390 62.8
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.6e-142 508.8 389 62.7
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 4.7e-142 508.4 388 64.9
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 8.0e-142 507.7 392 62.5
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 8.0e-142 507.7 390 63.1
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 5.2e-141 505.0 390 62.3
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 2.0e-140 503.1 375 65.9
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.6e-140 502.7 382 63.9
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.6e-140 502.7 395 61.5
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 3.3e-140 502.3 396 60.9
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 4.4e-140 501.9 387 63.3
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 9.7e-140 500.7 392 62.5
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 9.7e-140 500.7 387 62.0
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.3e-139 500.4 395 63.0
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.7e-139 500.0 387 62.8
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.2e-139 499.6 382 63.6
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 4.8e-139 498.4 389 62.5
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 6.3e-139 498.0 392 60.5
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 6.3e-139 498.0 392 60.5
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 6.3e-139 498.0 391 61.1
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 8.2e-139 497.7 390 62.6
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.1e-138 497.3 403 60.3
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.4e-138 496.9 388 61.3
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 2.4e-138 496.1 404 60.6
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 3.1e-138 495.7 390 62.1
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 4.1e-138 495.4 392 62.2
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 5.3e-138 495.0 399 61.2
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 5.3e-138 495.0 390 62.6
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 7.0e-138 494.6 390 61.8
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 9.1e-138 494.2 386 63.2
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 4.5e-137 491.9 387 62.3
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.7e-137 491.1 390 61.5
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 5.0e-136 488.4 394 61.2
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.1e-135 487.3 399 62.7
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.1e-135 487.3 400 58.2
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 5.5e-135 485.0 379 59.4
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.7e-134 481.9 372 62.9
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 8.0e-134 481.1 379 58.3
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.0e-133 480.7 383 60.3
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 3.0e-133 479.2 477 50.9
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 1.2e-132 477.2 434 56.2
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.6e-132 476.1 392 57.4
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 4.4e-132 475.3 468 51.9
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 9.8e-132 474.2 350 65.7
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 2.2e-131 473.0 370 62.4
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.1e-130 470.7 391 56.5
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 5.9e-129 464.9 437 54.0
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 7.7e-129 464.5 374 61.0
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 2.9e-128 462.6 364 61.5
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.5e-127 460.3 392 57.9
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 7.2e-127 458.0 493 49.3
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.2e-126 457.2 376 59.0
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 3.6e-126 455.7 367 60.8
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 8.0e-126 454.5 425 52.9
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 8.0e-126 454.5 387 59.2
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 1.8e-125 453.4 379 57.5
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 1.2e-124 450.7 378 58.7
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.0e-124 449.9 387 58.9
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.6e-124 449.5 374 57.5
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 3.7e-123 445.7 402 56.5
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 3.1e-122 442.6 379 56.7
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 3.1e-122 442.6 393 55.7
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 5.6e-119 431.8 378 56.9
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 9.5e-119 431.0 380 55.8
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 6.1e-118 428.3 379 54.6
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 6.8e-117 424.9 441 50.6
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.0e-116 423.3 380 53.4
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.0e-116 423.3 380 53.4
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 2.6e-116 422.9 381 54.3
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.4e-116 422.5 342 61.4
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.4e-116 422.5 342 61.4
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 4.4e-116 422.2 426 51.4
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 9.2e-106 387.9 414 46.4
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 1.9e-103 380.2 381 49.3
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 3.1e-101 372.9 411 47.0
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.1e-98 364.4 387 46.8
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 5.8e-92 342.0 207 74.9
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.3e-88 330.1 223 67.7
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.6e-88 328.6 225 65.3
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 9.9e-84 314.7 389 44.5
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 9.9e-84 314.7 423 39.7
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 8.1e-78 295.0 339 47.2
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.4e-75 285.0 141 84.4
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.6e-73 280.8 141 84.4
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.0e-72 278.1 145 82.8
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 2.4e-61 240.4 517 31.9
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.2e-58 229.6 115 84.3
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 3.3e-55 219.9 121 76.9
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.2e-46 188.7 91 85.7
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 4.8e-38 162.9 190 43.2
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 5.9e-36 156.0 212 44.8
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 2.0e-23 114.4 53 92.5
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 2.6e-23 114.0 58 81.0
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 9.7e-23 112.1 54 87.0
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 8.2e-22 109.0 51 92.2
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 8.2e-22 109.0 51 92.2
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 1.1e-21 108.6 95 53.7
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.0e-16 92.0 159 35.2
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 3.4e-15 87.0 61 70.5
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.5e-15 85.9 73 58.9
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 4.5e-12 76.6 39 84.6
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.0e-11 75.5 75 56.0
ECA240G3168 Erigeron canadensis HOM05D005474 ORTHO05D006551 4.0e-08 63.5 41 78.0


User provided reference genes

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