Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 4.1e-133 478.0 233 100.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 4.9e-78 295.0 234 62.8
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.3e-75 287.0 234 58.1
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 6.9e-72 274.6 193 65.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.4e-69 266.9 230 59.1
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.1e-65 253.1 229 53.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.1e-64 250.8 227 53.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.0e-64 248.8 234 52.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.4e-63 245.7 240 51.7
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 9.9e-63 244.2 234 52.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.2e-62 243.0 232 53.0
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 2.9e-62 242.7 229 53.3
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 3.8e-62 242.3 232 53.0
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.4e-61 239.6 227 51.5
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.5e-60 235.7 233 51.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 4.6e-60 235.3 230 50.9
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.3e-59 233.8 235 50.6
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.8e-59 233.4 232 51.3
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 3.9e-59 232.3 228 51.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 5.1e-59 231.9 233 50.6
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 5.1e-59 231.9 232 51.3
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 5.1e-59 231.9 230 52.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 5.1e-59 231.9 232 50.0
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 6.7e-59 231.5 233 51.1
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.7e-59 231.1 229 49.8
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.5e-58 229.6 233 49.8
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.5e-58 229.6 232 50.9
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 9.6e-58 227.6 232 50.4
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.8e-57 226.1 235 49.4
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 3.7e-57 225.7 234 49.1
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 8.1e-57 224.6 235 47.7
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.8e-56 223.4 235 48.1
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 4.0e-56 222.2 229 49.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 4.0e-56 222.2 234 49.1
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 5.3e-56 221.9 233 47.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.5e-55 220.3 227 50.2
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.8e-55 218.4 230 47.4
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.8e-55 218.4 234 49.1
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.2e-54 216.5 227 48.9
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 8.4e-54 214.5 234 47.9
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.4e-53 213.8 236 47.5
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.9e-53 213.4 231 48.1
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.9e-53 213.4 236 47.0
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.4e-53 213.0 233 48.5
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.2e-53 212.6 234 49.1
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 3.2e-53 212.6 232 47.8
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.5e-53 211.8 236 45.8
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.5e-53 211.8 236 45.8
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 5.5e-53 211.8 233 48.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.2e-52 210.7 236 44.9
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.2e-52 210.7 236 42.4
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.2e-52 210.7 230 47.0
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.1e-52 209.9 236 44.9
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.7e-52 209.5 236 41.5
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.5e-52 209.1 232 46.1
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 3.5e-52 209.1 230 46.5
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 3.5e-52 209.1 234 45.7
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.8e-51 206.8 236 41.1
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.3e-51 206.5 236 47.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 3.0e-51 206.1 234 44.4
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 5.1e-51 205.3 234 44.4
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.1e-51 205.3 236 42.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.5e-50 203.8 237 43.5
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.5e-50 203.8 187 56.7
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.9e-50 203.4 235 46.0
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.3e-50 202.2 231 43.7
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 5.6e-50 201.8 227 46.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.3e-49 200.7 233 45.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.6e-49 200.3 230 45.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.1e-49 199.9 235 43.0
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.1e-49 199.9 192 52.1
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.7e-49 199.1 235 43.8
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.7e-49 199.1 234 45.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 8.2e-49 198.0 233 43.8
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.8e-48 196.8 194 47.9
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.1e-48 196.1 151 58.3
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.0e-47 193.4 231 45.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 2.6e-47 193.0 215 44.2
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.4e-47 192.6 232 40.9
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 4.5e-47 192.2 236 43.6
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.2e-46 189.9 235 44.3
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.9e-46 189.5 229 40.6
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.9e-46 189.5 229 40.6
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.9e-46 188.7 229 40.6
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.4e-46 188.0 233 40.3
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.4e-45 187.2 229 40.2
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.5e-45 185.3 237 42.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 7.1e-45 184.9 230 43.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.2e-44 184.1 232 40.1
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.2e-44 184.1 239 42.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.2e-44 184.1 238 41.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-44 184.1 165 53.9
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-44 183.7 232 40.1
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.6e-44 183.7 232 40.1
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.6e-44 183.7 232 40.5
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 3.5e-44 182.6 232 40.1
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 3.5e-44 182.6 232 40.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 6.0e-44 181.8 232 42.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.0e-43 181.0 231 42.0
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.3e-43 180.6 231 41.6
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.8e-43 180.3 147 59.2
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 3.0e-43 179.5 234 42.3
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 6.7e-43 178.3 233 42.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.1e-42 177.6 204 47.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.5e-42 177.2 232 41.8
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.9e-42 176.8 204 47.1
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.5e-42 176.4 203 46.8
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.3e-42 175.6 233 41.2
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 7.4e-42 174.9 236 41.1
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-41 173.7 236 41.1
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.6e-41 173.7 238 38.2
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 2.2e-41 173.3 234 41.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 2.2e-41 173.3 214 40.7
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.8e-41 172.9 154 53.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 6.3e-41 171.8 233 39.9
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.4e-40 170.6 230 40.0
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-40 170.6 79 97.5
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.8e-40 170.2 154 53.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.8e-40 170.2 238 37.8
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.4e-40 169.9 233 41.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 3.1e-40 169.5 236 39.4
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.1e-40 169.5 147 56.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.1e-40 169.5 221 42.5
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 5.3e-40 168.7 234 37.6
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.2e-39 167.5 232 36.2
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.5e-39 167.2 229 38.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.6e-39 166.4 238 34.9
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 3.4e-39 166.0 233 39.1
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 7.6e-39 164.9 237 38.0
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.2e-38 163.3 154 49.4
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 2.9e-38 162.9 218 40.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 3.8e-38 162.5 229 38.9
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 8.5e-38 161.4 221 40.3
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.5e-37 159.8 194 40.7
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 7.2e-37 158.3 233 38.2
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-36 157.1 235 39.6
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-36 157.1 235 39.6
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.6e-36 155.6 231 39.4
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.6e-36 155.6 211 39.3
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 7.9e-36 154.8 211 36.5
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.0e-35 154.5 226 35.4
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.5e-34 150.6 174 42.0
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 4.3e-34 149.1 190 39.5
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-33 147.5 230 34.3
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.1e-32 144.4 230 36.5
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.1e-32 142.9 236 33.5
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.9e-31 138.7 200 37.5
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.2e-30 136.7 163 46.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 5.0e-30 135.6 122 51.6
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.4e-29 134.0 190 36.8
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.9e-29 133.7 235 35.3
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 5.5e-29 132.1 112 54.5
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.7e-28 129.8 221 34.4
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 5.1e-27 125.6 231 30.3
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.0e-26 123.6 214 29.4
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 8.2e-25 118.2 144 43.1
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.4e-24 117.5 99 58.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.8e-22 109.4 206 31.1
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.4e-21 107.5 231 28.6
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 7.2e-21 105.1 213 27.7
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.0e-18 97.1 102 45.1
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.3e-18 96.3 219 32.0
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 4.4e-18 95.9 88 52.3
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 3.7e-17 92.8 91 47.3
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.1e-16 89.4 92 43.5
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.5e-15 86.3 79 50.6
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.7e-14 84.0 198 27.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.2e-13 79.3 112 39.3
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.1e-12 77.0 120 35.0
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.0e-11 74.7 54 63.0
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-11 74.3 141 30.5
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.8e-11 73.9 78 43.6
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 6.7e-11 72.0 101 32.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 8.8e-11 71.6 99 33.3
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.3e-09 67.8 95 36.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.7e-09 67.4 125 30.4
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.0e-08 62.0 53 64.2


User provided reference genes

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