Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 3.0e-43 177.9 79 100.0
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 4.7e-41 170.6 79 97.5
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 7.3e-34 146.7 79 79.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.1e-29 132.9 79 70.9
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 9.2e-29 129.8 80 73.8
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 7.8e-28 126.7 80 73.8
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.3e-27 125.2 79 72.2
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.5e-26 121.7 73 75.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.2e-25 119.4 80 68.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-25 119.4 79 68.4
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.6e-25 119.0 80 66.2
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.1e-25 118.6 80 67.5
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.8e-25 118.2 79 67.1
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.8e-25 118.2 77 70.1
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 2.8e-25 118.2 78 70.5
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.7e-25 117.5 80 68.8
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.7e-25 117.5 81 69.1
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.8e-24 115.5 80 66.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.4e-24 115.2 79 68.4
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.4e-24 115.2 80 66.2
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.4e-24 115.2 77 67.5
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.4e-24 115.2 77 67.5
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.4e-24 115.2 77 66.2
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.1e-24 114.8 81 65.4
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.1e-24 114.8 81 65.4
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.1e-24 114.8 81 64.2
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.1e-24 114.8 80 67.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 4.0e-24 114.4 83 67.5
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.2e-24 114.0 81 64.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 5.2e-24 114.0 80 66.2
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 6.9e-24 113.6 78 66.7
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 6.9e-24 113.6 80 65.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 9.0e-24 113.2 80 60.0
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 9.0e-24 113.2 80 60.0
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 9.0e-24 113.2 80 63.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 9.0e-24 113.2 80 65.0
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.2e-23 112.8 78 67.9
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.2e-23 112.8 83 66.3
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-23 112.5 79 68.4
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.5e-23 112.5 80 65.0
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.0e-23 112.1 81 64.2
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.0e-23 112.1 80 65.0
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.6e-23 111.7 80 68.8
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.6e-23 111.7 83 62.7
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.6e-23 111.7 78 65.4
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 3.4e-23 111.3 80 62.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 3.4e-23 111.3 78 66.7
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.8e-23 110.5 79 67.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.8e-23 110.5 81 64.2
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 5.8e-23 110.5 80 62.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 7.6e-23 110.2 80 65.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 7.6e-23 110.2 80 65.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 7.6e-23 110.2 80 63.8
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.6e-23 110.2 81 63.0
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 9.9e-23 109.8 79 63.3
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.7e-22 109.0 79 63.3
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.7e-22 109.0 80 63.8
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.7e-22 109.0 86 58.1
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.2e-22 108.6 80 62.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.2e-22 108.6 80 66.2
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-22 108.6 80 61.2
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 2.9e-22 108.2 79 64.6
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.9e-22 107.5 80 63.8
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.4e-22 107.1 84 59.5
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 8.4e-22 106.7 79 58.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-21 106.3 81 61.7
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.4e-21 105.9 79 59.5
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.9e-21 105.5 81 60.5
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.4e-21 105.1 77 62.3
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.2e-21 104.8 83 59.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.2e-21 104.8 78 64.1
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 4.2e-21 104.4 80 62.5
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 4.2e-21 104.4 80 62.5
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.2e-21 104.4 83 57.8
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 4.2e-21 104.4 83 57.8
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.6e-20 102.4 81 59.3
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.1e-20 102.1 80 58.8
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.1e-20 102.1 79 58.2
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.7e-20 101.7 81 58.0
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 3.5e-20 101.3 85 52.9
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-20 101.3 79 54.4
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-20 101.3 79 54.4
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-20 101.3 79 54.4
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.5e-20 101.3 94 54.3
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.6e-20 100.9 79 54.4
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 4.6e-20 100.9 80 56.2
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 6.0e-20 100.5 73 65.8
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.8e-20 100.1 81 58.0
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 7.8e-20 100.1 78 55.1
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.0e-19 99.8 75 60.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.0e-19 99.8 80 57.5
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.7e-19 99.0 79 53.2
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 3.0e-19 98.2 79 55.7
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 6.6e-19 97.1 79 55.7
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 6.6e-19 97.1 76 55.3
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 8.7e-19 96.7 76 53.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.1e-18 96.3 81 56.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.1e-18 96.3 80 57.5
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.1e-18 96.3 74 63.5
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.9e-18 95.5 81 55.6
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.9e-18 95.5 79 57.0
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 2.5e-18 95.1 80 56.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.3e-18 94.7 81 55.6
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 3.3e-18 94.7 81 54.3
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 4.3e-18 94.4 80 52.5
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.3e-18 94.4 73 64.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 9.6e-18 93.2 81 55.6
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 9.6e-18 93.2 81 54.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.3e-17 92.8 83 48.2
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.3e-17 92.8 82 54.9
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.6e-17 92.4 80 51.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.1e-17 92.0 80 52.5
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.1e-17 92.0 81 54.3
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.8e-17 91.7 79 53.2
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.8e-17 91.7 80 55.0
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 3.6e-17 91.3 75 50.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 3.6e-17 91.3 79 53.2
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 4.8e-17 90.9 78 53.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 4.8e-17 90.9 79 51.9
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 6.2e-17 90.5 81 49.4
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 6.2e-17 90.5 81 49.4
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 8.1e-17 90.1 81 49.4
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 8.1e-17 90.1 81 49.4
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 8.1e-17 90.1 81 49.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.1e-16 89.7 78 53.8
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.4e-16 89.4 80 52.5
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.4e-16 88.6 79 53.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 3.1e-16 88.2 75 54.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 4.0e-16 87.8 82 54.9
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 4.0e-16 87.8 82 54.9
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.0e-16 87.8 80 50.0
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.5e-15 85.9 83 45.8
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.5e-15 85.9 80 48.8
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 2.6e-15 85.1 80 51.2
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 3.4e-15 84.7 68 51.5
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 4.5e-15 84.3 79 49.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 5.8e-15 84.0 82 50.0
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 9.9e-15 83.2 79 50.6
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 2.9e-14 81.6 80 50.0
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 3.8e-14 81.3 79 45.6
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.4e-14 80.5 62 56.5
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.4e-13 78.6 80 43.8
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 9.3e-13 76.6 54 64.8
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-12 76.3 56 55.4
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 2.7e-12 75.1 80 47.5
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 4.6e-12 74.3 65 55.4
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.9e-12 73.6 69 52.2
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 4.3e-10 67.8 69 42.0
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 9.6e-10 66.6 65 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.8e-09 65.1 79 38.0
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 6.2e-09 63.9 51 60.8
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.1e-08 61.6 78 38.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.1e-08 61.6 72 43.1
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.5e-07 59.3 41 56.1
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.0e-07 58.9 38 60.5
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.6e-07 58.5 53 62.3
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 3.4e-07 58.2 51 64.7
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 4.5e-07 57.8 51 58.8
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 9.9e-07 56.6 51 62.7
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.7e-06 55.8 56 46.4
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.9e-06 55.1 30 76.7


User provided reference genes

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