Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 1.2e-46 189.5 95 100.0
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 4.5e-46 187.6 95 98.9
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 4.5e-46 187.6 95 98.9
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 6.8e-18 94.0 51 68.6
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 2.8e-16 88.6 51 70.6
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.1e-15 86.7 49 67.3
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 1.1e-15 86.7 83 45.8
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.8e-15 85.9 51 68.6
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 1.8e-15 85.9 51 64.7
Sp1g17450 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.8e-15 85.9 83 45.8
AT1G19610 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.4e-15 85.5 83 45.8
Carub.0001s1915 Capsella rubella HOM05D002484 ORTHO05D002541 2.4e-15 85.5 83 44.6
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 2.4e-15 85.5 51 68.6
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 3.1e-15 85.1 51 62.7
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 3.1e-15 85.1 51 66.7
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 4.1e-15 84.7 49 65.3
Thhalv10009242m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.1e-15 84.7 83 45.8
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 4.1e-15 84.7 50 68.0
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 5.4e-15 84.3 53 67.9
BraA08t34910Z Brassica rapa HOM05D002484 ORTHO05D002541 7.0e-15 84.0 82 45.1
MELO3C018229.2 Cucumis melo HOM05D002484 ORTHO05D002541 7.0e-15 84.0 51 72.5
HanXRQChr06g0182141 Helianthus annuus HOM05D002484 ORTHO05D002541 7.0e-15 84.0 88 48.9
BcaB03g12908 Brassica carinata HOM05D002484 ORTHO05D002541 9.1e-15 83.6 83 44.6
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 9.1e-15 83.6 83 44.6
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 9.1e-15 83.6 83 44.6
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.2e-14 83.2 83 44.6
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 1.2e-14 83.2 50 64.0
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 1.6e-14 82.8 50 64.0
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 1.6e-14 82.8 50 64.0
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 1.6e-14 82.8 51 66.7
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-14 82.4 50 64.0
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 2.0e-14 82.4 50 64.0
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 2.0e-14 82.4 50 64.0
BolC8t49576H Brassica oleracea HOM05D002484 ORTHO05D002541 2.0e-14 82.4 82 45.1
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 3.5e-14 81.6 83 43.4
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 4.5e-14 81.3 68 52.9
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 1.0e-13 80.1 71 49.3
CsaV3_3G044510 Cucumis sativus L. HOM05D002484 ORTHO05D002541 1.0e-13 80.1 51 68.6
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 1.0e-13 80.1 51 60.8
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 1.0e-13 80.1 53 58.5
Thecc.08G031200 Theobroma cacao HOM05D002484 ORTHO05D002541 1.0e-13 80.1 51 64.7
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 1.3e-13 79.7 48 62.5
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 1.3e-13 79.7 51 60.8
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.3e-13 79.7 51 64.7
ECA236G3870 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.3e-13 79.7 50 64.0
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 1.3e-13 79.7 51 64.7
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 1.7e-13 79.3 50 64.0
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 2.9e-13 78.6 94 45.7
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 2.9e-13 78.6 61 52.5
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 2.9e-13 78.6 61 52.5
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 3.8e-13 78.2 65 55.4
Peaxi162Scf00324g00717 Petunia axillaris HOM05D002484 ORTHO05D002541 6.5e-13 77.4 51 56.9
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.1e-12 76.6 51 62.7
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.1e-12 76.6 51 62.7
Glyma.18G027700 Glycine max HOM05D002484 ORTHO05D002541 1.1e-12 76.6 50 64.0
TWI75G1456 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.5e-12 76.3 55 56.4
Duzib093G0380 Durio zibethinus HOM05D002484 ORTHO05D002541 1.9e-12 75.9 49 61.2
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 2.5e-12 75.5 48 64.6
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 2.5e-12 75.5 86 46.5
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 2.5e-12 75.5 51 62.7
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 3.2e-12 75.1 51 62.7
BcaC08g43338 Brassica carinata HOM05D002484 ORTHO05D002541 4.2e-12 74.7 51 60.8
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 5.5e-12 74.3 58 56.9
TWI79G0221 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 5.5e-12 74.3 50 60.0
FAN20G0586 Fragaria x ananassa HOM05D002484 ORTHO05D002541 7.2e-12 73.9 70 47.1
Lsat_1_v5_gn_7_90580 Lactuca sativa HOM05D002484 ORTHO05D002541 9.5e-12 73.6 58 56.9
PSO302G0221 Papaver somniferum HOM05D018786 ORTHO05D002541 1.6e-11 72.8 53 56.6
DCAR_028972 Daucus carota HOM05D002484 ORTHO05D002541 2.1e-11 72.4 48 56.2
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 2.1e-11 72.4 46 63.0
Duzib248G1325 Durio zibethinus HOM05D001795 ORTHO05D002541 3.6e-11 71.6 50 60.0
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 3.6e-11 71.6 61 52.5
ECA236G0027 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.1e-11 70.9 50 56.0
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 6.1e-11 70.9 51 60.8
Psat4g203640 Pisum sativum HOM05D002484 ORTHO05D002541 6.1e-11 70.9 65 49.2
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 8.0e-11 70.5 85 37.6
HanXRQChr16g0505571 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-10 70.1 50 58.0
Lsat_1_v5_gn_7_90221 Lactuca sativa HOM05D002484 ORTHO05D002541 1.0e-10 70.1 70 50.0
Lsat_1_v5_gn_7_90281 Lactuca sativa HOM05D002484 ORTHO05D002541 1.0e-10 70.1 70 47.1
Medtr8g012785 Medicago truncatula HOM05D002484 ORTHO05D002541 1.0e-10 70.1 51 60.8
Medtr8g012805 Medicago truncatula HOM05D002484 ORTHO05D002541 4.0e-10 68.2 65 49.2
A08p29750 Brassica napus HOM05D002484 ORTHO05D002541 5.2e-10 67.8 41 61.0
C08p19530 Brassica napus HOM05D002484 ORTHO05D002541 5.2e-10 67.8 41 61.0
ECA236G2297 Erigeron canadensis HOM05D002484 ORTHO05D002541 5.2e-10 67.8 83 36.1
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 5.2e-10 67.8 63 47.6
TPR.G11190 Trifolium pratense HOM05D002484 ORTHO05D002541 5.2e-10 67.8 65 50.8
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 6.8e-10 67.4 88 43.2
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 1.2e-09 66.6 65 46.2
Atru.chr13.431 Acer truncatum HOM05D002484 ORTHO05D002541 1.5e-09 66.2 84 42.9
Lsat_1_v5_gn_7_90181 Lactuca sativa HOM05D002484 ORTHO05D002541 2.6e-09 65.5 78 42.3
TPR.G17112 Trifolium pratense HOM05D002484 ORTHO05D002541 2.6e-09 65.5 50 58.0
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 3.4e-09 65.1 50 54.0
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 5.7e-09 64.3 50 54.0
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 7.5e-09 63.9 50 52.0
Thhalv10029442m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 7.5e-09 63.9 51 51.0
HanXRQChr04g0128041 Helianthus annuus HOM05D002484 ORTHO05D002541 7.5e-09 63.9 88 36.4
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 9.8e-09 63.5 50 56.0
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 9.8e-09 63.5 51 54.9
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 9.8e-09 63.5 51 54.9
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 9.8e-09 63.5 51 54.9
Psat4g205640 Pisum sativum HOM05D002484 ORTHO05D002541 9.8e-09 63.5 61 44.3
Prupe.8G071600 Prunus persica HOM05D002484 ORTHO05D002541 9.8e-09 63.5 80 47.5
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 9.8e-09 63.5 46 56.5
AUR62015448 Chenopodium quinoa HOM05D000074 ORTHO05D000696 1.7e-08 62.8 50 48.0
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 2.2e-08 62.4 51 52.9
Lsat_1_v5_gn_7_90161 Lactuca sativa HOM05D002484 ORTHO05D002541 2.2e-08 62.4 53 49.1
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.7e-08 61.6 51 52.9
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 4.9e-08 61.2 51 51.0
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.9e-08 61.2 51 51.0
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 6.3e-08 60.8 51 51.0
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 6.3e-08 60.8 51 51.0
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 8.3e-08 60.5 54 48.1
ECA236G0419 Erigeron canadensis HOM05D002484 ORTHO05D002541 8.3e-08 60.5 50 50.0
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.1e-07 60.1 57 47.4
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-07 60.1 51 51.0
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 1.1e-07 60.1 51 51.0
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 1.1e-07 60.1 75 40.0
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 1.1e-07 60.1 51 51.0
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 1.4e-07 59.7 51 51.0
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 1.4e-07 59.7 75 40.0
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 1.4e-07 59.7 75 38.7
Medtr8g012875 Medicago truncatula HOM05D002484 ORTHO05D002541 1.4e-07 59.7 68 44.1
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.4e-07 59.7 51 51.0
Actinidia25332 Actinidia chinensis HOM05D002484 ORTHO05D002541 1.8e-07 59.3 52 51.9
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 1.8e-07 59.3 51 51.0
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-07 59.3 72 41.7
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-07 59.3 72 41.7
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 1.8e-07 59.3 72 41.7
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.4e-07 58.9 63 42.9
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 2.4e-07 58.9 51 51.0
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 2.4e-07 58.9 51 51.0
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-07 58.9 51 51.0
HanXRQChr16g0505531 Helianthus annuus HOM05D002484 ORTHO05D220526 2.4e-07 58.9 49 51.0
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.1e-07 58.5 54 48.1
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.1e-07 58.5 75 40.0
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 3.1e-07 58.5 75 38.7
Ciclev10029711m.g Citrus clementina HOM05D002484 ORTHO05D002541 3.1e-07 58.5 51 49.0
Medtr8g012860 Medicago truncatula HOM05D002484 ORTHO05D002541 3.1e-07 58.5 51 52.9
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.1e-07 58.2 67 41.8
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 4.1e-07 58.2 63 42.9
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.1e-07 58.2 54 44.4
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 5.4e-07 57.8 72 40.3
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-07 57.8 67 41.8
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-07 57.8 72 40.3
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-07 57.8 75 38.7
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 5.4e-07 57.8 72 40.3
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 5.4e-07 57.8 67 41.8
COL.COLO4_25965 Corchorus olitorius HOM05D002484 ORTHO05D002541 5.4e-07 57.8 79 40.5
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 5.4e-07 57.8 57 45.6
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 5.4e-07 57.8 51 51.0
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 7.0e-07 57.4 51 49.0
HanXRQChr16g0505541 Helianthus annuus HOM05D002484 ORTHO05D002541 7.0e-07 57.4 49 44.9
HanXRQChr16g0505561 Helianthus annuus HOM05D002484 ORTHO05D002541 7.0e-07 57.4 49 44.9
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 9.2e-07 57.0 51 47.1
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 9.2e-07 57.0 72 40.3
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 9.2e-07 57.0 72 40.3
Carub.0002s1189 Capsella rubella HOM05D002484 ORTHO05D002541 9.2e-07 57.0 58 43.1
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 9.2e-07 57.0 51 49.0
Gohir.D05G260250 Gossypium hirsutum HOM05D023139 ORTHO05D002541 9.2e-07 57.0 58 46.6
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 1.2e-06 56.6 72 40.3
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 1.2e-06 56.6 81 38.3
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 1.2e-06 56.6 81 38.3
Gohir.A05G258500 Gossypium hirsutum HOM05D023139 ORTHO05D002541 1.2e-06 56.6 52 48.1
Medtr8g012800 Medicago truncatula HOM05D002484 ORTHO05D002541 1.2e-06 56.6 70 41.4
Atru.chr5.3053 Acer truncatum HOM05D002484 ORTHO05D002541 1.6e-06 56.2 43 53.5
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.6e-06 56.2 75 38.7
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.6e-06 56.2 67 40.3
Nitab4.5_0000023g0340 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.6e-06 56.2 49 53.1
BcaC08g45551 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-06 55.8 70 41.4
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.0e-06 55.8 67 40.3
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.0e-06 55.8 75 37.3
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.0e-06 55.8 75 38.7
Solyc01g011435.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 2.0e-06 55.8 49 53.1
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 2.7e-06 55.5 75 37.3
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.5e-06 55.1 75 37.3
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.5e-06 54.7 72 38.9
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.5e-06 54.7 49 51.0
Nitab4.5_0002537g0050 Nicotiana tabacum HOM05D024896 ORTHO05D011265 4.5e-06 54.7 42 52.4
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 5.9e-06 54.3 81 35.8
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 5.9e-06 54.3 81 35.8
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 5.9e-06 54.3 75 38.7
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 5.9e-06 54.3 75 38.7
SHI09116 Sapria himalayana HOM05D002484 ORTHO05D002541 5.9e-06 54.3 60 41.7
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 7.8e-06 53.9 81 37.0
CARHR069320 Cardamine hirsuta HOM05D002484 ORTHO05D002541 7.8e-06 53.9 55 40.0


User provided reference genes

Program Settings