Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-42 175.3 89 100.0
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 2.6e-27 125.2 63 95.2
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 2.6e-27 125.2 83 78.3
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-27 125.2 63 95.2
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 8.3e-26 120.2 63 90.5
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 8.3e-26 120.2 63 90.5
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 8.3e-26 120.2 63 90.5
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 8.3e-26 120.2 63 90.5
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 8.3e-26 120.2 63 90.5
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-25 119.8 63 90.5
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.8e-25 119.0 63 88.9
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.8e-25 119.0 63 88.9
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 3.1e-25 118.2 63 88.9
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.1e-25 117.9 63 88.9
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.1e-25 117.9 63 88.9
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 4.1e-25 117.9 63 88.9
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 4.1e-25 117.9 63 88.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 5.3e-25 117.5 63 88.9
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 5.3e-25 117.5 63 88.9
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.3e-25 117.5 63 88.9
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 9.1e-25 116.7 63 88.9
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 9.1e-25 116.7 83 72.3
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.2e-24 116.3 63 87.3
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.2e-24 116.3 63 87.3
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.2e-24 116.3 63 87.3
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.2e-24 116.3 63 87.3
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.2e-24 116.3 63 87.3
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.2e-24 116.3 63 87.3
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.2e-24 116.3 63 87.3
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-24 114.8 63 85.7
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.9e-24 114.0 63 87.3
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.9e-24 114.0 63 84.1
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 7.7e-24 113.6 63 87.3
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.7e-23 112.5 63 85.7
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.7e-23 112.5 63 85.7
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.2e-23 112.1 63 85.7
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.2e-23 112.1 63 85.7
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.2e-23 112.1 63 85.7
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-23 112.1 63 85.7
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-23 111.3 63 85.7
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 3.8e-23 111.3 56 94.6
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.8e-23 111.3 63 82.5
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.8e-23 111.3 64 81.2
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 5.0e-23 110.9 62 87.1
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 5.0e-23 110.9 62 87.1
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 5.0e-23 110.9 62 87.1
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.5e-23 110.5 63 84.1
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-22 109.8 63 79.4
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.5e-22 109.4 63 84.1
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 2.5e-22 108.6 62 85.5
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 3.2e-22 108.2 83 65.1
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 4.2e-22 107.8 58 87.9
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.2e-22 107.8 63 81.0
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 4.2e-22 107.8 62 82.3
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 4.2e-22 107.8 62 82.3
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 4.2e-22 107.8 62 82.3
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 4.2e-22 107.8 62 82.3
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 4.2e-22 107.8 62 85.5
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 1.2e-21 106.3 62 85.5
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 2.1e-21 105.5 62 80.6
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.1e-21 105.5 63 84.1
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.7e-21 105.1 63 79.4
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 8.0e-21 103.6 60 83.3
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.0e-21 103.6 62 80.6
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 1.0e-20 103.2 62 85.5
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-20 102.8 63 79.4
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.0e-20 101.7 63 79.4
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 5.2e-20 100.9 56 85.7
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 2.0e-19 99.0 55 85.5
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.6e-19 98.6 58 82.8
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 8.3e-18 93.6 62 72.6
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.1e-17 93.2 63 74.6
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.1e-17 93.2 60 76.7
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 4.1e-17 91.3 48 87.5
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 5.4e-17 90.9 50 84.0
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 5.4e-17 90.9 46 91.3
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.0e-17 90.5 49 85.7
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 2.0e-16 89.0 46 89.1
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.5e-16 88.2 46 89.1
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 4.5e-16 87.8 48 83.3
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 5.9e-16 87.4 55 80.0
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 5.9e-16 87.4 55 76.4
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 7.7e-16 87.0 43 93.0
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.6e-15 84.0 48 77.1
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 6.6e-15 84.0 61 68.9
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 3.3e-14 81.6 63 68.3
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 9.5e-14 80.1 46 78.3
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.6e-13 78.2 41 87.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 4.7e-13 77.8 54 64.8
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 6.1e-13 77.4 38 94.7
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 6.1e-13 77.4 38 94.7
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 1.5e-11 72.8 44 81.8
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.6e-11 72.0 43 79.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 9.8e-11 70.1 51 68.6
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 2.8e-10 68.6 41 78.0
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 2.8e-10 68.6 57 63.2
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-10 67.4 35 91.4
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 2.4e-09 65.5 36 86.1
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 9.2e-09 63.5 63 57.1
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.2e-08 63.2 32 90.6
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.2e-08 63.2 41 78.0
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-08 61.6 30 93.3
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.0e-07 60.1 31 83.9
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.3e-07 58.9 47 59.6
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-07 58.5 45 68.9
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-07 58.5 45 68.9
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-07 58.5 45 68.9


User provided reference genes

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