Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.6e-152 542.0 268 100.0
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-123 446.4 301 77.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 3.2e-121 438.7 301 76.7
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 5.8e-115 417.9 304 72.7
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.7e-114 416.4 301 72.4
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 6.0e-112 407.9 301 69.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.0e-111 407.1 301 69.4
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.3e-111 406.8 301 69.1
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 3.0e-111 405.6 301 69.1
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.0e-111 405.6 301 69.1
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 5.1e-111 404.8 301 68.8
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.6e-111 404.4 301 68.8
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.1e-110 403.7 301 69.1
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.1e-110 403.7 301 68.8
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.5e-110 403.3 301 68.1
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.3e-110 401.0 301 68.4
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 9.5e-110 400.6 301 69.1
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 9.5e-110 400.6 301 67.8
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.5e-110 400.6 301 68.1
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.2e-109 400.2 301 68.4
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.2e-109 400.2 301 68.4
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.6e-109 399.8 301 68.1
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-109 399.8 301 68.1
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.6e-109 399.8 301 68.4
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 3.6e-109 398.7 301 68.4
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 4.7e-109 398.3 301 67.8
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.7e-109 398.3 301 68.1
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 4.7e-109 398.3 301 68.1
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.7e-109 398.3 301 68.4
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 4.7e-109 398.3 301 67.8
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.7e-109 398.3 301 68.1
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 6.2e-109 397.9 301 68.1
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 8.1e-109 397.5 301 68.1
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.1e-108 397.1 301 67.1
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.4e-108 396.7 301 67.8
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.8e-108 396.4 301 68.8
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.3e-108 396.0 301 67.8
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.3e-108 396.0 301 68.1
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 2.3e-108 396.0 301 67.1
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 3.1e-108 395.6 301 68.1
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 3.1e-108 395.6 301 68.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 4.0e-108 395.2 301 67.4
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 5.2e-108 394.8 301 67.8
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 6.8e-108 394.4 301 67.1
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.8e-108 394.4 301 67.8
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 6.8e-108 394.4 301 67.1
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 8.9e-108 394.0 301 67.8
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.2e-107 393.7 301 67.4
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.5e-107 393.3 301 67.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.5e-107 393.3 301 67.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.5e-107 393.3 301 68.4
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.5e-107 393.3 301 67.8
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.0e-107 392.9 301 67.4
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 2.0e-107 392.9 301 67.4
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.6e-107 392.5 301 67.4
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.4e-107 392.1 301 67.1
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 3.4e-107 392.1 301 67.8
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.4e-107 391.7 301 66.4
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 4.4e-107 391.7 301 67.8
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 5.8e-107 391.3 303 67.3
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 9.9e-107 390.6 301 67.4
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.3e-106 390.2 301 66.8
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.3e-106 390.2 301 66.4
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.3e-106 390.2 301 66.4
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.3e-106 390.2 301 66.8
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.3e-106 390.2 301 65.8
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.7e-106 389.8 301 66.4
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.2e-106 389.4 301 66.4
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.2e-106 389.4 301 66.1
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.9e-106 389.0 301 66.4
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.9e-106 389.0 301 66.1
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.9e-106 389.0 304 66.4
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.7e-106 388.7 301 66.1
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.7e-106 388.7 301 67.1
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 3.7e-106 388.7 301 65.4
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.7e-106 388.7 301 66.8
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 4.9e-106 388.3 301 66.1
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 6.4e-106 387.9 301 66.4
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 6.4e-106 387.9 301 66.4
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 8.3e-106 387.5 301 66.8
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.3e-106 387.5 301 67.1
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.1e-105 387.1 301 67.1
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.4e-105 386.7 301 65.4
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.9e-105 386.3 301 66.4
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.9e-105 386.3 312 65.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 3.2e-105 385.6 301 66.1
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 7.1e-105 384.4 306 66.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 7.1e-105 384.4 301 67.4
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 9.2e-105 384.0 301 66.1
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 9.2e-105 384.0 303 66.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 9.2e-105 384.0 303 65.3
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.2e-104 383.6 301 66.1
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.2e-104 383.6 301 66.1
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.2e-104 383.6 341 60.4
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.6e-104 383.3 301 66.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.1e-104 382.9 302 66.6
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.1e-104 382.9 309 64.7
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.1e-104 382.9 316 64.6
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.6e-104 381.7 301 65.4
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 4.6e-104 381.7 301 66.1
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-103 380.2 302 66.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.3e-103 379.4 301 64.5
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 3.9e-103 378.6 301 64.1
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 8.6e-103 377.5 301 64.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.9e-102 376.3 301 65.4
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.5e-102 375.9 301 64.8
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 7.3e-102 374.4 301 64.5
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.1e-100 370.5 301 64.1
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 5.2e-100 368.2 301 62.8
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 5.2e-100 368.2 335 59.7
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.2e-99 367.1 301 63.1
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.8e-99 364.8 301 62.8
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 4.9e-98 361.7 328 60.1
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.1e-97 360.5 304 62.2
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.6e-96 355.1 277 66.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.3e-95 352.8 302 61.3
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.5e-94 349.4 274 66.4
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 5.6e-94 348.2 274 66.1
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.5e-91 340.1 301 60.8
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 3.8e-90 335.5 301 60.1
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 4.0e-84 315.5 179 84.9
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.2e-83 313.9 269 61.7
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 3.5e-80 302.4 179 81.6
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 5.6e-78 295.0 249 63.9
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-75 287.3 166 83.7
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.4e-74 281.2 302 54.3
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 4.6e-72 275.4 317 50.2
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 5.8e-67 258.5 147 83.0
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.1e-65 251.5 230 60.0
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 2.1e-64 250.0 322 45.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.4e-59 232.6 205 62.0
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.0e-55 221.1 132 77.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.8e-53 212.2 206 56.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 2.6e-51 206.5 132 75.0
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-50 204.1 192 62.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 8.5e-50 201.4 319 40.4
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 3.1e-44 183.0 266 42.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.8e-37 159.8 267 39.3
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 3.7e-37 159.5 157 60.5
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.6e-32 142.9 157 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.6e-27 127.5 157 49.0
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.9e-27 125.6 76 78.9
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.2e-23 112.5 67 79.1
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.8e-21 106.7 152 44.7
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-19 101.3 112 51.8
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 5.9e-19 99.0 55 80.0
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.9e-18 96.7 131 46.6
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.8e-18 96.3 54 81.5
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 7.2e-17 92.0 142 39.4
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 7.2e-17 92.0 61 73.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.7e-13 80.9 61 72.1
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.1e-12 78.2 43 81.4
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.6e-08 64.3 40 72.5
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.8e-07 60.8 38 68.4
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 1.5e-06 57.8 38 73.7


User provided reference genes

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