Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 1.2e-82 309.7 148 100.0
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 2.0e-64 249.2 160 76.9
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 3.1e-54 215.3 160 69.4
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 2.2e-52 209.1 160 62.5
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 1.4e-49 199.9 160 63.8
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.0e-44 183.7 157 57.3
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.3e-44 183.3 157 57.3
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 2.5e-43 179.1 158 57.6
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 3.3e-43 178.7 158 56.3
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 3.3e-43 178.7 158 57.6
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 3.3e-43 178.7 158 57.0
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 4.2e-43 178.3 158 57.6
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 9.5e-43 177.2 160 56.9
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 9.5e-43 177.2 160 56.9
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 1.2e-42 176.8 160 56.9
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 2.1e-42 176.0 156 58.3
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 2.1e-42 176.0 158 57.0
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 2.1e-42 176.0 164 52.4
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 2.8e-42 175.6 143 59.4
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 2.8e-42 175.6 158 55.1
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 2.8e-42 175.6 158 55.1
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 2.8e-42 175.6 164 53.7
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 3.6e-42 175.3 158 57.6
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 4.7e-42 174.9 160 56.2
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 6.1e-42 174.5 158 54.4
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 6.1e-42 174.5 158 55.1
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 8.0e-42 174.1 158 55.1
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 8.0e-42 174.1 160 55.6
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 8.0e-42 174.1 162 54.9
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.0e-41 173.7 160 55.6
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 1.4e-41 173.3 158 57.0
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.8e-41 172.9 158 53.8
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 1.8e-41 172.9 158 55.1
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 1.8e-41 172.9 158 55.7
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 2.3e-41 172.6 158 55.7
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 3.0e-41 172.2 165 53.3
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 3.0e-41 172.2 158 55.7
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 4.0e-41 171.8 165 54.5
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 4.0e-41 171.8 158 53.2
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 5.2e-41 171.4 158 55.7
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 5.2e-41 171.4 160 55.0
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 6.8e-41 171.0 159 54.7
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 6.8e-41 171.0 159 54.7
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 6.8e-41 171.0 158 53.2
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 6.8e-41 171.0 165 54.5
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 8.9e-41 170.6 158 54.4
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 1.2e-40 170.2 158 53.8
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 1.5e-40 169.9 161 52.2
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 1.5e-40 169.9 158 51.9
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 2.0e-40 169.5 158 55.1
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 2.6e-40 169.1 159 54.7
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 2.6e-40 169.1 158 53.8
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 2.6e-40 169.1 154 55.2
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 5.7e-40 167.9 158 53.2
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 7.5e-40 167.5 158 55.7
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 7.5e-40 167.5 158 55.1
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 7.5e-40 167.5 158 55.1
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 9.8e-40 167.2 159 54.1
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 1.3e-39 166.8 158 51.9
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 1.7e-39 166.4 159 54.1
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 2.8e-39 165.6 159 53.5
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 2.8e-39 165.6 158 53.2
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 3.7e-39 165.2 161 52.8
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 3.7e-39 165.2 158 52.5
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 4.9e-39 164.9 189 49.2
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 6.3e-39 164.5 158 51.9
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 1.1e-38 163.7 161 52.2
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 1.4e-38 163.3 159 54.1
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 1.8e-38 162.9 159 54.7
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 2.4e-38 162.5 158 53.2
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 2.4e-38 162.5 158 51.9
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 4.1e-38 161.8 159 51.6
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 5.4e-38 161.4 163 49.1
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 7.0e-38 161.0 158 51.3
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 1.2e-37 160.2 158 51.9
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 1.2e-37 160.2 160 48.8
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 1.6e-37 159.8 159 50.3
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 2.0e-37 159.5 157 52.2
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 3.5e-37 158.7 159 50.9
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 4.5e-37 158.3 157 50.3
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 1.7e-36 156.4 141 55.3
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 2.9e-36 155.6 161 49.7
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 6.6e-36 154.5 160 48.1
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 1.1e-35 153.7 158 48.1
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 1.1e-35 153.7 158 48.1
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 1.5e-35 153.3 158 48.1
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 1.5e-35 153.3 158 48.1
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 1.5e-35 153.3 158 50.0
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 1.5e-35 153.3 158 48.1
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.9e-35 152.9 158 48.7
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 1.9e-35 152.9 158 48.7
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 1.9e-35 152.9 158 48.7
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 1.9e-35 152.9 158 50.6
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 1.9e-35 152.9 158 48.1
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 2.5e-35 152.5 159 48.4
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 2.5e-35 152.5 158 50.6
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 3.3e-35 152.1 109 66.1
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 4.3e-35 151.8 158 47.5
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 4.3e-35 151.8 158 48.1
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 7.3e-35 151.0 154 51.3
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 9.5e-35 150.6 162 50.0
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 1.6e-34 149.8 158 50.0
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 2.1e-34 149.4 158 49.4
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 2.3e-33 146.0 151 49.7
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.2e-31 139.4 158 44.3
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 8.3e-31 137.5 134 50.7
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 3.0e-28 129.0 160 41.2
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 4.3e-27 125.2 136 48.5
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 1.1e-25 120.6 158 43.7
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 1.1e-25 120.6 137 48.9
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.7e-21 105.9 74 64.9
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 8.6e-20 100.9 158 34.2
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 7.3e-19 97.8 157 37.6
Pp3c5_28960 Physcomitrium patens HOM05D005266 ORTHO05D006416 3.1e-17 92.4 157 32.5
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 2.2e-15 86.3 99 48.5
SMO147G0195 Selaginella moellendorffii HOM05D005266 ORTHO05D006416 2.9e-15 85.9 132 33.3
MD06G1116200 Malus domestica HOM05D005266 ORTHO05D006416 6.0e-13 78.2 134 38.8
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 6.6e-12 74.7 64 59.4
TAR303G0001 Trochodendron aralioides HOM05D005266 ORTHO05D003403 1.4e-09 67.0 85 44.7
CBR_g26176 Chara braunii HOM05D005266 ORTHO05D006416 2.4e-09 66.2 106 32.1
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.2e-08 63.9 37 75.7
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 2.0e-08 63.2 44 68.2
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 2.9e-07 59.3 39 71.8
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 3.8e-07 58.9 56 51.8
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.1e-06 57.4 38 71.1
TPR.G25301 Trifolium pratense HOM05D005266 ORTHO05D006416 1.1e-06 57.4 69 43.5
Thecc.03G165000 Theobroma cacao HOM05D005266 ORTHO05D006416 1.4e-06 57.0 44 59.1


User provided reference genes

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