Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0063601 Helianthus annuus HOM05D001292 ORTHO05D001202 4.9e-149 531.2 282 100.0
HanXRQChr12g0368581 Helianthus annuus HOM05D001292 ORTHO05D001202 3.3e-12 76.6 179 30.7
Zm00001eb153850 Zea mays HOM05D001292 ORTHO05D001202 1.6e-11 74.3 70 47.1
TPR.G32100 Trifolium pratense HOM05D001292 ORTHO05D001202 2.1e-11 73.9 62 48.4
Nitab4.5_0002579g0090 Nicotiana tabacum HOM05D001292 ORTHO05D001202 8.2e-11 72.0 106 36.8
HPP92_020276 Vanilla planifolia HOM05D001292 ORTHO05D001202 8.2e-11 72.0 70 45.7
Cc11_g14630 Coffea canephora HOM05D001292 ORTHO05D001202 1.1e-10 71.6 67 47.8
ECA233G2320 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.1e-10 71.6 63 47.6
RcHm_v2.0_Chr3g0455541 Rosa chinensis HOM05D001292 ORTHO05D001202 1.1e-10 71.6 65 44.6
Migut.L01409 Erythranthe guttata HOM05D001292 ORTHO05D001202 1.4e-10 71.2 63 50.8
Aqoxy3G02988 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 2.4e-10 70.5 64 51.6
Glyma.18G137700 Glycine max HOM05D001292 ORTHO05D001202 2.4e-10 70.5 63 50.8
Lalb_Chr09g0335011 Lupinus albus HOM05D001292 ORTHO05D001202 2.4e-10 70.5 63 49.2
PSO832G2131 Papaver somniferum HOM05D001292 ORTHO05D001202 2.4e-10 70.5 69 43.5
Phvul.003G052200 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 2.4e-10 70.5 63 50.8
Sopen05g001630 Solanum pennellii HOM05D001292 ORTHO05D001202 2.4e-10 70.5 106 35.8
SGA_v2.0_scaffold8G04226 Striga asiatica HOM05D001292 ORTHO05D001202 2.4e-10 70.5 64 48.4
arahy.Tifrunner.gnm1.ann1.XAFC77 Arachis hypogaea HOM05D001292 ORTHO05D001202 4.1e-10 69.7 80 43.8
Medtr8g064470 Medicago truncatula HOM05D001292 ORTHO05D001202 4.1e-10 69.7 68 45.6
Rhsim12G0121000 Rhododendron simsii HOM05D001292 ORTHO05D001202 4.1e-10 69.7 65 49.2
MSTRG.7894 Avicennia marina HOM05D001292 ORTHO05D001202 5.3e-10 69.3 63 50.8
Haze_12172 Corylus avellana HOM05D001292 ORTHO05D001202 5.3e-10 69.3 64 50.0
DCAR_007092 Daucus carota HOM05D001292 ORTHO05D001202 5.3e-10 69.3 177 29.9
Lj4g0026951 Lotus japonicus HOM05D001292 ORTHO05D001202 5.3e-10 69.3 63 50.8
Sed0021630 Sechium edule HOM05D001292 ORTHO05D001202 5.3e-10 69.3 63 50.8
PSO063G4088 Papaver somniferum HOM05D001292 ORTHO05D001202 6.9e-10 68.9 69 42.0
CSS0024382 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 9.0e-10 68.6 65 49.2
Ca_22729_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 9.0e-10 68.6 169 28.4
Sc11g0001210 Simmondsia chinensis HOM05D001292 ORTHO05D001202 9.0e-10 68.6 174 31.6
SGA_v2.0_scaffold165G38250 Striga asiatica HOM05D001292 ORTHO05D001202 9.0e-10 68.6 64 48.4
arahy.Tifrunner.gnm1.ann1.UYF69H Arachis hypogaea HOM05D001292 ORTHO05D001202 1.2e-09 68.2 191 29.3
MSTRG.597 Avicennia marina HOM05D001292 ORTHO05D001202 1.2e-09 68.2 63 49.2
TWI18G1467 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 1.2e-09 68.2 68 47.1
CAN.G376.11 Capsicum annuum HOM05D001292 ORTHO05D001202 1.5e-09 67.8 63 49.2
Peaxi162Scf00338g00116 Petunia axillaris HOM05D001292 ORTHO05D001202 1.5e-09 67.8 63 50.8
PGR119G2170 Punica granatum HOM05D001292 ORTHO05D001202 1.5e-09 67.8 85 38.8
Lsat_1_v5_gn_3_48100 Lactuca sativa HOM05D001292 ORTHO05D001202 2.0e-09 67.4 181 28.2
TAR374G1183 Trochodendron aralioides HOM05D001292 ORTHO05D001202 2.0e-09 67.4 63 49.2
VMungo0251G2116 Vigna mungo HOM05D001292 ORTHO05D001202 2.0e-09 67.4 184 28.8
Manes.13G030900 Manihot esculenta HOM05D001292 ORTHO05D001202 2.6e-09 67.0 63 49.2
Os12g0606900 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 2.6e-09 67.0 68 47.1
RcHm_v2.0_Chr4g0443941 Rosa chinensis HOM05D001292 ORTHO05D001202 2.6e-09 67.0 67 47.8
THA.LOC104823662 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 2.6e-09 67.0 64 46.9
Psat4g125280 Pisum sativum HOM05D001292 ORTHO05D001202 3.4e-09 66.6 63 47.6
Actinidia13513 Actinidia chinensis HOM05D001292 ORTHO05D001202 4.5e-09 66.2 65 49.2
EL10Ac6g13669 Beta vulgaris HOM05D001292 ORTHO05D001202 4.5e-09 66.2 63 47.6
Thhalv10007260m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 4.5e-09 66.2 68 50.0
Solyc05g005630.4 Solanum lycopersicum HOM05D001292 ORTHO05D001202 4.5e-09 66.2 63 47.6
BcaC05g24936 Brassica carinata HOM05D001292 ORTHO05D001202 5.9e-09 65.9 68 47.1
CANSAT01G2663 Cannabis sativa HOM05D001292 ORTHO05D001202 5.9e-09 65.9 178 29.8
FvH4_4g34560 Fragaria vesca HOM05D001292 ORTHO05D001202 5.9e-09 65.9 67 46.3
Prupe.1G254600 Prunus persica HOM05D001292 ORTHO05D001202 5.9e-09 65.9 175 30.3
CsaV3_5G031600 Cucumis sativus L. HOM05D001292 ORTHO05D001202 7.6e-09 65.5 63 49.2
Dinv24863 Davidia involucrata HOM05D001292 ORTHO05D001202 7.6e-09 65.5 184 29.9
Gohir.A04G135200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 7.6e-09 65.5 66 47.0
Hund25343 Selenicereus undatus HOM05D001292 ORTHO05D001202 7.6e-09 65.5 63 49.2
unitig_26.g10341 Utricularia gibba HOM05D001292 ORTHO05D001202 7.6e-09 65.5 64 46.9
Zm00001eb208510 Zea mays HOM05D001292 ORTHO05D001202 7.6e-09 65.5 66 42.4
Actinidia15043 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.0e-08 65.1 65 47.7
ATR0730G146 Amborella trichopoda HOM05D001292 ORTHO05D001202 1.0e-08 65.1 63 46.0
Cpa.g.sc69.25 Carica papaya HOM05D001292 ORTHO05D001202 1.0e-08 65.1 63 46.0
Dinv15305 Davidia involucrata HOM05D001292 ORTHO05D001202 1.0e-08 65.1 63 47.6
Gohir.D04G178300 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.0e-08 65.1 66 47.0
Gorai.012G171400 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.0e-08 65.1 66 47.0
Atru.chr11.2015 Acer truncatum HOM05D001292 ORTHO05D001202 1.3e-08 64.7 173 29.5
A06p07320 Brassica napus HOM05D001292 ORTHO05D001202 1.3e-08 64.7 68 45.6
BraA06t23937Z Brassica rapa HOM05D001292 ORTHO05D001202 1.3e-08 64.7 68 45.6
CiPaw.05G150600 Carya illinoinensis HOM05D001292 ORTHO05D001202 1.3e-08 64.7 202 30.2
Oeu056395.2 Olea europaea HOM05D001292 ORTHO05D001202 1.3e-08 64.7 63 47.6
Potri.010G040600 Populus trichocarpa HOM05D001292 ORTHO05D001202 1.3e-08 64.7 63 47.6
Solyc04g026200.3 Solanum lycopersicum HOM05D001292 ORTHO05D001202 1.3e-08 64.7 63 47.6
Eucgr.H02612 Eucalyptus grandis HOM05D001292 ORTHO05D001202 1.7e-08 64.3 67 46.3
Manes.12G029500 Manihot esculenta HOM05D001292 ORTHO05D001202 1.7e-08 64.3 63 46.0
Nitab4.5_0004636g0020 Nicotiana tabacum HOM05D001292 ORTHO05D001202 1.7e-08 64.3 63 49.2
QL03p061415 Quercus lobata HOM05D001292 ORTHO05D001202 1.7e-08 64.3 169 27.8
Cfa009140 Carpinus fangiana HOM05D001292 ORTHO05D001202 2.2e-08 63.9 184 30.4
Duzib248G1000 Durio zibethinus HOM05D001292 ORTHO05D001202 2.2e-08 63.9 166 28.9
ECA246G0922 Erigeron canadensis HOM05D001292 ORTHO05D001202 2.2e-08 63.9 239 28.0
Sp1g09220 Schrenkiella parvula HOM05D001292 ORTHO05D001202 2.2e-08 63.9 167 31.7
GSVIVG01020235001 Vitis vinifera HOM05D001292 ORTHO05D001202 2.2e-08 63.9 173 28.3
Aa31LG2G10100 Aethionema arabicum HOM05D001292 ORTHO05D001202 2.9e-08 63.5 68 44.1
MBI16_g36056_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 2.9e-08 63.5 170 27.6
BcaC04g22220 Brassica carinata HOM05D001292 ORTHO05D001202 3.8e-08 63.2 71 42.3
BcaC05g24868 Brassica carinata HOM05D001292 ORTHO05D001202 3.8e-08 63.2 68 44.1
A09p17630 Brassica napus HOM05D001292 ORTHO05D001202 3.8e-08 63.2 71 42.3
C05p08830 Brassica napus HOM05D001292 ORTHO05D001202 3.8e-08 63.2 68 44.1
BolC5t29630H Brassica oleracea HOM05D001292 ORTHO05D001202 3.8e-08 63.2 68 44.1
BolC9t55101H Brassica oleracea HOM05D001292 ORTHO05D001202 3.8e-08 63.2 71 42.3
BraA09t37393Z Brassica rapa HOM05D001292 ORTHO05D001202 3.8e-08 63.2 71 42.3
Carub.0002s0503 Capsella rubella HOM05D001292 ORTHO05D001202 3.8e-08 63.2 71 43.7
C09p21960 Brassica napus HOM05D001292 ORTHO05D001202 5.0e-08 62.8 71 42.3
Thecc.02G248100 Theobroma cacao HOM05D001292 ORTHO05D001202 5.0e-08 62.8 166 28.3
AL1G21390 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 6.5e-08 62.4 68 45.6
Carub.0001s1001 Capsella rubella HOM05D001292 ORTHO05D001202 6.5e-08 62.4 68 44.1
Thhalv10023376m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 6.5e-08 62.4 71 43.7
Sp2g04460 Schrenkiella parvula HOM05D001292 ORTHO05D001202 6.5e-08 62.4 68 44.1
SpUn0106_0010 Schrenkiella parvula HOM05D001292 ORTHO05D001202 6.5e-08 62.4 68 44.1
AT1G10570 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 8.4e-08 62.0 68 45.6
CAN.G60.9 Capsicum annuum HOM05D001292 ORTHO05D001202 8.4e-08 62.0 65 46.2
CARHR052740 Cardamine hirsuta HOM05D001292 ORTHO05D001202 8.4e-08 62.0 68 44.1
CDE04G1081 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 8.4e-08 62.0 64 45.3
Ciclev10031081m.g Citrus clementina HOM05D001292 ORTHO05D001202 8.4e-08 62.0 175 29.7
HPP92_008297 Vanilla planifolia HOM05D001292 ORTHO05D001202 8.4e-08 62.0 64 43.8
Aa31LG1G4360 Aethionema arabicum HOM05D001292 ORTHO05D001202 1.1e-07 61.6 68 41.2
Pp3c25_7310 Physcomitrium patens HOM05D001292 ORTHO05D001202 1.1e-07 61.6 72 41.7
AT1G60220 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 1.4e-07 61.2 68 42.6
CARHR010730 Cardamine hirsuta HOM05D001292 ORTHO05D001202 1.4e-07 61.2 68 47.1
CDE06G2008 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 1.4e-07 61.2 64 43.8
Pp3c17_2400 Physcomitrium patens HOM05D001292 ORTHO05D001202 1.4e-07 61.2 69 39.1
Pp3c5_19870 Physcomitrium patens HOM05D001292 ORTHO05D001202 1.4e-07 61.2 72 40.3
ClCG05G025290 Citrullus lanatus HOM05D001292 ORTHO05D001202 1.9e-07 60.8 63 47.6
HanXRQChr15g0490121 Helianthus annuus HOM05D001292 ORTHO05D001202 1.9e-07 60.8 190 30.0
Actinidia01160 Actinidia chinensis HOM05D001292 ORTHO05D001202 2.5e-07 60.5 89 37.1
Pp3c9_4420 Physcomitrium patens HOM05D001292 ORTHO05D001202 4.2e-07 59.7 69 37.7
AL2G16440 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 5.5e-07 59.3 68 42.6
BcaB07g31205 Brassica carinata HOM05D001292 ORTHO05D001202 5.5e-07 59.3 68 39.7
CBR_g17607 Chara braunii HOM05D001292 ORTHO05D001202 5.5e-07 59.3 68 41.2
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 5.5e-07 59.3 71 38.0
Os06g0487900 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 7.2e-07 58.9 68 39.7
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 7.2e-07 58.9 71 38.0
TPR.G34572 Trifolium pratense HOM05D001292 ORTHO05D001202 7.2e-07 58.9 79 35.4
Ca_00162_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 1.2e-06 58.2 71 38.0
Medtr3g100390 Medicago truncatula HOM05D001292 ORTHO05D001202 1.2e-06 58.2 70 34.3
Psat2g064720 Pisum sativum HOM05D001292 ORTHO05D001202 1.2e-06 58.2 73 35.6
ATR0767G167 Amborella trichopoda HOM05D001292 ORTHO05D001202 1.6e-06 57.8 68 36.8
ECA234G2749 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.6e-06 57.8 67 38.8
Phvul.006G202100 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 1.6e-06 57.8 71 36.6
TPR.G9503 Trifolium pratense HOM05D001292 ORTHO05D001202 1.6e-06 57.8 106 28.3
Zm00001eb031350 Zea mays HOM05D001292 ORTHO05D001202 1.6e-06 57.8 64 43.8
Mapoly0025s0054 Marchantia polymorpha HOM05D001292 ORTHO05D001202 2.1e-06 57.4 68 38.2
GSVIVG01009173001 Vitis vinifera HOM05D001292 ORTHO05D001202 2.1e-06 57.4 71 36.6
MELO3C018604.2 Cucumis melo HOM05D001292 ORTHO05D001202 2.7e-06 57.0 71 36.6
CsaV3_7G006900 Cucumis sativus L. HOM05D001292 ORTHO05D001202 2.7e-06 57.0 71 36.6
Pp3c25_3200 Physcomitrium patens HOM05D001292 ORTHO05D001202 2.7e-06 57.0 66 36.4
Potri.007G115400 Populus trichocarpa HOM05D001292 ORTHO05D001202 2.7e-06 57.0 71 36.6
AagrBONN_evm.TU.Sc2ySwM_228.281 Anthoceros agrestis HOM05D001292 ORTHO05D001202 3.5e-06 56.6 65 41.5
AagrBONN_evm.TU.Sc2ySwM_228.75 Anthoceros agrestis HOM05D001292 ORTHO05D001202 3.5e-06 56.6 65 41.5
BraA08t35351Z Brassica rapa HOM05D001292 ORTHO05D001202 3.5e-06 56.6 102 28.4
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 3.5e-06 56.6 71 35.2
Medtr5g066240 Medicago truncatula HOM05D001292 ORTHO05D001202 3.5e-06 56.6 73 32.9
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 3.5e-06 56.6 71 35.2
VMungo0540G0648 Vigna mungo HOM05D001292 ORTHO05D001202 3.5e-06 56.6 71 36.6
Atru.chr6.1255 Acer truncatum HOM05D001292 ORTHO05D001202 4.6e-06 56.2 71 36.6
Ah.05g170840 Amaranthus hybridus HOM05D001292 ORTHO05D001202 4.6e-06 56.2 71 36.6
BcaNung06984 Brassica carinata HOM05D001292 ORTHO05D001202 4.6e-06 56.2 102 28.4
A08p34390 Brassica napus HOM05D001292 ORTHO05D001202 4.6e-06 56.2 102 28.4
C08p13140 Brassica napus HOM05D001292 ORTHO05D001202 4.6e-06 56.2 102 28.4
BolC8t48942H Brassica oleracea HOM05D001292 ORTHO05D001202 4.6e-06 56.2 102 28.4
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 4.6e-06 56.2 71 33.8
LjContig00408g0003702 Lotus japonicus HOM05D001292 ORTHO05D001202 4.6e-06 56.2 71 35.2
RcHm_v2.0_Chr6g0271021 Rosa chinensis HOM05D001292 ORTHO05D001202 4.6e-06 56.2 71 33.8
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 4.6e-06 56.2 70 34.3
TWI56G0043 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 4.6e-06 56.2 102 30.4
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 6.1e-06 55.8 71 33.8
BcaC09g52173 Brassica carinata HOM05D001292 ORTHO05D001202 6.1e-06 55.8 64 37.5
C01p05090 Brassica napus HOM05D001292 ORTHO05D001202 6.1e-06 55.8 64 37.5
BolC1t00491H Brassica oleracea HOM05D001292 ORTHO05D001202 6.1e-06 55.8 64 37.5
BolC4t25531H Brassica oleracea HOM05D001292 ORTHO05D001202 6.1e-06 55.8 103 27.2
Glyma.02G214100 Glycine max HOM05D001292 ORTHO05D001202 6.1e-06 55.8 71 35.2
Glyma.15G058100 Glycine max HOM05D001292 ORTHO05D001202 6.1e-06 55.8 69 36.2
Psat1g215560 Pisum sativum HOM05D001292 ORTHO05D001202 6.1e-06 55.8 71 35.2
Hund16858 Selenicereus undatus HOM05D001292 ORTHO05D001202 6.1e-06 55.8 67 37.3
HPP92_024212 Vanilla planifolia HOM05D001292 ORTHO05D001202 6.1e-06 55.8 89 36.0
HPP92_027860 Vanilla planifolia HOM05D001292 ORTHO05D001202 6.1e-06 55.8 89 36.0
arahy.Tifrunner.gnm1.ann1.6V6D2H Arachis hypogaea HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 35.2
ClCG09G016070 Citrullus lanatus HOM05D001292 ORTHO05D001202 7.9e-06 55.5 64 35.9
FAN15G0696 Fragaria x ananassa HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 35.2
HanXRQChr05g0157911 Helianthus annuus HOM05D001292 ORTHO05D225287 7.9e-06 55.5 25 96.0
Lj1g0015973 Lotus japonicus HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 35.2
Lj6g0027662 Lotus japonicus HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 35.2
Lalb_Chr08g0242481 Lupinus albus HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 35.2
Psat5g046880 Pisum sativum HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 35.2
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 7.9e-06 55.5 89 36.0
Sabra02G0083000 Salix brachista HOM05D001292 ORTHO05D001202 7.9e-06 55.5 102 29.4
Hund27020 Selenicereus undatus HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 33.8
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 35.2
TAR381G1516 Trochodendron aralioides HOM05D001292 ORTHO05D001202 7.9e-06 55.5 71 33.8


User provided reference genes

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