Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 4.8e-160 567.8 284 100.0
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-108 397.1 229 88.6
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 7.2e-100 367.9 203 90.1
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-98 362.8 205 88.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 6.8e-98 361.3 204 88.7
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 4.4e-97 358.6 205 90.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-93 347.1 196 91.3
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-93 346.3 196 90.3
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-87 327.0 195 85.6
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.2e-63 245.7 197 66.0
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.0e-61 241.1 188 67.6
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 6.9e-58 228.4 178 65.2
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 9.9e-57 224.6 211 56.9
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.6e-54 217.2 198 57.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 6.6e-53 211.8 194 58.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.1e-52 211.1 191 57.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-52 211.1 194 55.7
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.9e-52 210.3 187 56.1
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.5e-52 209.9 187 56.7
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 5.6e-52 208.8 199 55.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 9.6e-52 208.0 191 56.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.1e-51 206.8 202 53.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.2e-51 205.3 230 46.1
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.1e-50 204.5 257 45.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.8e-50 203.8 187 55.6
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.8e-50 203.8 191 53.9
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 4.0e-50 202.6 192 53.6
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 5.3e-50 202.2 191 55.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.3e-50 202.2 191 53.4
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 9.0e-50 201.4 197 50.3
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.2e-49 201.1 197 52.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.0e-49 200.3 187 55.1
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.6e-49 199.9 191 53.9
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 3.4e-49 199.5 191 52.4
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.4e-49 199.5 191 52.9
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.4e-49 199.5 191 55.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.4e-49 199.5 197 50.8
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 4.5e-49 199.1 196 54.1
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 5.8e-49 198.7 190 55.3
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 5.8e-49 198.7 194 51.5
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 7.6e-49 198.4 191 53.9
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 7.6e-49 198.4 191 53.9
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.3e-48 197.6 181 56.4
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.2e-48 196.8 193 50.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 4.9e-48 195.7 187 55.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 4.9e-48 195.7 202 52.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 6.4e-48 195.3 191 52.9
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 8.4e-48 194.9 198 51.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.1e-47 194.5 193 50.3
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-47 194.1 193 50.8
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.9e-47 193.7 193 50.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.9e-47 193.7 196 53.6
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.4e-47 193.4 191 53.4
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.4e-47 193.4 199 54.3
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.2e-47 193.0 187 52.4
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 4.2e-47 192.6 198 53.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 4.2e-47 192.6 195 54.4
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 5.5e-47 192.2 195 50.3
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 7.1e-47 191.8 196 52.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 9.3e-47 191.4 192 54.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.2e-46 191.0 195 51.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.2e-46 191.0 191 52.9
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.6e-46 190.7 193 51.8
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.7e-46 189.9 197 50.8
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.5e-46 189.5 191 52.4
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 4.6e-46 189.1 192 52.6
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 4.6e-46 189.1 191 53.9
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 4.6e-46 189.1 192 52.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.0e-46 188.7 191 53.9
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 6.0e-46 188.7 185 56.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.0e-46 188.7 181 53.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 7.9e-46 188.3 195 51.3
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 7.9e-46 188.3 197 50.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.8e-45 187.2 185 56.2
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 3.0e-45 186.4 191 48.2
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.0e-45 186.4 191 52.9
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.9e-45 186.0 198 52.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.1e-45 185.7 191 50.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.1e-45 185.7 191 51.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 5.1e-45 185.7 192 50.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.1e-45 185.7 195 50.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 5.1e-45 185.7 197 50.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.7e-45 185.3 192 49.5
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 8.7e-45 184.9 191 51.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.1e-44 184.5 197 50.3
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-44 184.5 192 47.4
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-44 184.5 196 48.5
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.5e-44 184.1 188 53.2
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.5e-44 184.1 185 54.6
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 7.4e-44 181.8 192 50.5
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 9.6e-44 181.4 196 51.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.3e-43 181.0 188 52.7
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.1e-43 180.3 193 50.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.1e-43 180.3 197 48.7
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-43 179.5 196 47.4
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 6.2e-43 178.7 174 54.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 8.1e-43 178.3 194 49.5
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.4e-42 177.6 197 47.2
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.4e-42 177.6 197 48.7
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.4e-42 177.6 195 47.2
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.8e-42 177.2 191 49.2
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.8e-42 177.2 187 50.8
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.9e-42 175.3 199 47.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.2e-41 174.5 191 50.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.4e-41 172.9 197 46.7
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.5e-41 172.6 189 49.2
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.5e-41 172.6 191 48.2
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.8e-41 172.2 191 45.5
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 7.6e-41 171.8 198 48.0
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.0e-40 171.4 150 57.3
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.3e-40 171.0 190 48.9
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-40 171.0 197 46.7
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.8e-40 169.5 193 48.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.8e-40 169.5 177 49.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 8.4e-40 168.3 238 42.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.4e-39 167.5 197 44.7
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.4e-39 167.5 185 50.3
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.4e-39 167.5 197 48.2
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.9e-39 167.2 197 44.7
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 2.5e-39 166.8 187 46.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 4.2e-39 166.0 187 45.5
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.2e-39 166.0 198 48.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 7.1e-39 165.2 175 48.6
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.2e-38 164.5 186 47.3
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.6e-38 164.1 245 40.0
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 6.0e-38 162.2 187 46.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.0e-38 162.2 193 45.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.8e-37 160.6 163 52.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 3.0e-37 159.8 186 45.2
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.7e-37 158.3 196 41.8
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 8.7e-37 158.3 201 45.8
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 4.3e-36 156.0 196 41.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 5.7e-36 155.6 192 45.8
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 9.6e-36 154.8 186 42.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.6e-35 154.1 170 49.4
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.8e-35 153.3 187 43.3
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.4e-34 151.0 187 44.9
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.4e-34 150.2 193 43.0
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.9e-34 148.7 163 46.6
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.5e-33 146.0 193 41.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 7.6e-33 145.2 167 46.7
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 5.5e-31 139.0 132 54.5
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.3e-31 138.3 168 47.6
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-30 137.9 191 44.0
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.9e-29 132.9 191 42.4
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 5.1e-29 132.5 198 39.4
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.7e-29 132.1 170 40.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.5e-28 131.0 197 42.6
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.5e-28 130.2 187 39.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.4e-28 128.6 130 49.2
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.6e-27 127.5 191 40.3
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.8e-27 126.7 141 44.7
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.7e-27 126.3 196 37.8
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 4.8e-27 125.9 196 37.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.2e-27 125.2 153 45.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.2e-27 125.2 162 42.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-26 124.8 124 51.6
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.5e-25 119.4 156 43.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.2e-24 117.1 188 41.0
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.4e-23 114.4 126 45.2
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.5e-23 113.6 191 40.8
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.2e-23 112.1 166 38.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.4e-18 97.1 113 46.9
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.1e-15 88.2 100 48.0
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-14 84.7 190 35.8
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.6e-14 83.2 164 33.5
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 4.7e-14 82.8 224 27.2
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.8e-13 80.9 217 29.0
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.1e-12 78.2 181 33.7
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.5e-12 77.8 83 51.8
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.3e-11 74.7 167 31.1
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.5e-09 66.2 199 30.7
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.9e-09 65.9 106 39.6
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 9.4e-07 58.5 149 28.9
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.1e-06 57.4 76 40.8
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.6e-06 56.6 72 41.7


User provided reference genes

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