Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 4.2e-107 391.3 197 100.0
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 7.0e-102 374.0 197 95.4
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-97 360.1 197 91.9
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 4.0e-97 358.2 197 90.4
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-96 355.1 195 90.3
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-95 351.7 197 88.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 5.4e-94 347.8 198 89.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 4.3e-91 338.2 197 88.3
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-87 326.2 195 85.6
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 6.2e-66 254.6 197 65.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.4e-65 252.7 180 71.7
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.0e-60 235.7 179 64.2
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.1e-57 227.3 198 57.1
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 5.3e-57 224.9 198 58.1
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-55 219.5 188 56.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.9e-55 219.2 188 56.4
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 8.4e-55 217.6 194 59.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-52 210.7 191 54.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.0e-52 209.1 188 55.3
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.9e-52 208.8 191 55.0
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.7e-52 208.0 188 55.3
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 6.7e-52 208.0 195 53.3
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.7e-52 208.0 191 53.4
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.1e-51 207.2 190 54.2
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.1e-51 207.2 197 51.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.5e-51 206.8 190 55.3
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.5e-51 206.8 193 53.4
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.5e-51 206.8 191 51.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.5e-51 206.8 191 53.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.9e-51 206.5 191 53.9
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.9e-51 206.5 199 51.8
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.9e-51 206.5 191 53.4
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.5e-51 206.1 197 53.3
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.3e-51 205.7 192 51.0
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 3.3e-51 205.7 194 51.0
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 4.3e-51 205.3 191 52.9
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.6e-51 204.9 192 51.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 5.6e-51 204.9 191 51.8
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 9.6e-51 204.1 191 52.4
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.8e-50 202.6 195 49.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.8e-50 202.6 181 55.2
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 3.7e-50 202.2 191 53.9
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.7e-50 202.2 195 55.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.7e-50 202.2 191 51.3
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 4.8e-50 201.8 195 49.2
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.8e-50 201.8 198 50.0
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.8e-50 201.8 191 52.9
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 6.2e-50 201.4 191 53.4
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.4e-49 200.3 191 53.4
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.4e-49 200.3 191 51.8
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.4e-49 199.5 187 50.3
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 6.9e-49 198.0 197 52.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 9.0e-49 197.6 189 52.4
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 9.0e-49 197.6 191 52.4
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.2e-48 197.2 192 52.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.2e-48 197.2 191 50.8
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.2e-48 197.2 199 50.8
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-48 196.8 192 49.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.5e-48 196.8 192 51.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.0e-48 196.4 192 53.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.6e-48 196.1 195 50.3
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.4e-48 195.7 188 50.0
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.5e-48 195.3 191 51.8
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 4.5e-48 195.3 197 47.2
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.8e-48 194.9 197 47.7
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.0e-47 194.1 191 51.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.0e-47 194.1 181 50.3
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.3e-47 193.7 197 48.2
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.3e-47 193.7 190 53.7
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.7e-47 193.4 196 50.5
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.7e-47 193.4 197 48.2
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.2e-47 193.0 199 48.7
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.2e-47 193.0 191 49.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 2.2e-47 193.0 193 49.7
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.8e-47 192.2 196 49.5
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.8e-47 192.2 191 52.9
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.5e-47 191.4 191 51.8
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 8.4e-47 191.0 195 48.2
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.4e-47 191.0 191 50.3
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 8.4e-47 191.0 191 49.2
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.4e-46 190.3 187 48.7
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.5e-46 189.5 192 45.8
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 4.2e-46 188.7 192 50.5
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 4.2e-46 188.7 189 51.9
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.2e-46 188.7 192 47.4
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.2e-46 188.7 187 52.9
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 5.5e-46 188.3 195 47.7
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 9.3e-46 187.6 192 46.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 9.3e-46 187.6 187 52.9
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.7e-45 186.0 187 52.4
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 4.6e-45 185.3 197 48.2
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 6.0e-45 184.9 192 46.4
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.9e-45 184.5 189 49.2
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.3e-44 183.7 196 47.4
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.3e-44 183.7 195 45.6
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 2.3e-44 183.0 174 53.4
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.0e-44 182.6 199 45.7
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.7e-44 181.0 194 47.4
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.1e-43 180.6 199 45.7
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.1e-43 180.6 199 46.7
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.5e-43 180.3 196 48.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.5e-43 180.3 189 50.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.5e-43 179.5 191 48.7
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.3e-43 179.1 150 58.7
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 4.3e-43 178.7 193 47.2
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.3e-43 178.7 196 46.4
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 7.4e-43 177.9 181 48.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 7.4e-43 177.9 195 47.7
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 9.6e-43 177.6 193 46.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 9.6e-43 177.6 199 47.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.3e-42 177.2 198 46.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.1e-42 176.4 187 47.6
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.1e-42 176.4 186 51.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.1e-42 176.4 192 47.9
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 3.7e-42 175.6 238 40.8
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 8.2e-42 174.5 188 45.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.4e-41 173.7 188 44.7
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.4e-41 173.7 191 47.1
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.1e-41 172.6 193 48.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.3e-41 171.8 188 45.7
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 6.9e-41 171.4 192 44.8
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.2e-40 170.6 192 44.3
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.0e-40 169.9 193 46.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.8e-40 168.3 187 45.5
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.3e-39 167.2 197 44.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-39 166.8 182 47.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.9e-39 166.0 195 43.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.0e-39 165.2 173 49.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 8.4e-39 164.5 187 44.4
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.9e-38 163.3 195 42.6
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.9e-38 163.3 194 45.9
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.5e-38 162.9 188 46.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 3.2e-38 162.5 193 45.6
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.1e-37 159.8 188 43.6
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.7e-37 159.5 187 41.7
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 6.1e-37 158.3 198 44.4
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.3e-36 156.4 163 50.3
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 3.9e-36 155.6 193 43.0
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.9e-35 153.3 163 46.6
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.5e-35 152.9 143 51.7
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.3e-35 152.1 188 41.5
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.1e-33 147.5 145 50.3
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-33 147.1 191 37.7
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.8e-33 146.7 195 40.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.5e-32 142.1 191 41.9
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.3e-31 140.6 164 43.3
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.7e-31 140.2 196 38.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 2.9e-31 139.4 191 41.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.8e-31 139.0 191 41.4
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.0e-31 138.7 188 39.4
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 5.0e-31 138.7 196 38.3
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.9e-30 136.7 158 44.9
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.5e-30 135.2 160 48.1
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.6e-29 132.1 124 54.0
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-28 131.0 191 39.3
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.3e-28 129.8 130 46.9
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.5e-27 127.1 141 44.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.2e-26 123.2 142 42.3
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.2e-26 123.2 193 40.9
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.1e-25 119.4 126 43.7
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-24 117.1 153 41.8
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.7e-23 113.6 189 37.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 9.7e-19 97.8 113 44.2
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-15 87.4 181 30.9
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.3e-15 87.4 107 44.9
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.0e-15 85.5 184 33.2
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 5.0e-15 85.5 224 25.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 3.2e-14 82.8 215 26.5
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.2e-14 82.8 190 33.2
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.7e-13 79.7 187 29.9
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 3.9e-12 75.9 84 51.2
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 9.7e-11 71.2 190 29.5
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.7e-10 70.5 105 40.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.3e-07 60.8 74 40.5
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 8.5e-07 58.2 151 31.1
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 8.5e-07 58.2 74 37.8


User provided reference genes

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