Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0053421 Helianthus annuus HOM05D001415 ORTHO05D001075 4.6e-28 127.5 80 100.0
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 2.2e-17 92.0 46 87.0
Lsat_1_v5_gn_2_106661 Lactuca sativa HOM05D001415 ORTHO05D001075 2.1e-12 75.5 39 84.6
Lsat_1_v5_gn_6_25220 Lactuca sativa HOM05D001415 ORTHO05D001075 1.8e-11 72.4 37 83.8
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 3.0e-11 71.6 38 76.3
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 5.2e-11 70.9 38 78.9
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 6.7e-11 70.5 36 72.2
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 8.8e-11 70.1 39 74.4
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 8.8e-11 70.1 36 69.4
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.8e-11 70.1 36 72.2
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 8.8e-11 70.1 43 65.1
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 8.8e-11 70.1 35 82.9
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 2.0e-10 68.9 43 62.8
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 3.3e-10 68.2 40 62.5
Prupe.6G233800 Prunus persica HOM05D001415 ORTHO05D001075 4.4e-10 67.8 46 58.7
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 5.7e-10 67.4 41 65.9
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 7.5e-10 67.0 38 71.1
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 7.5e-10 67.0 41 68.3
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 7.5e-10 67.0 38 71.1
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 7.5e-10 67.0 38 71.1
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 7.5e-10 67.0 40 65.0
SHI12464 Sapria himalayana HOM05D001415 ORTHO05D001075 7.5e-10 67.0 36 72.2
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 9.7e-10 66.6 41 63.4
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 9.7e-10 66.6 38 68.4
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 9.7e-10 66.6 38 73.7
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 9.7e-10 66.6 38 73.7
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 9.7e-10 66.6 34 73.5
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 9.7e-10 66.6 36 69.4
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 9.7e-10 66.6 34 73.5
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 1.3e-09 66.2 33 78.8
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 1.3e-09 66.2 36 75.0
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 1.3e-09 66.2 36 75.0
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 1.3e-09 66.2 36 75.0
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.3e-09 66.2 41 65.9
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.3e-09 66.2 34 73.5
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.3e-09 66.2 34 76.5
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.3e-09 66.2 34 76.5
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 1.3e-09 66.2 38 68.4
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 1.7e-09 65.9 38 71.1
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 1.7e-09 65.9 36 72.2
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.7e-09 65.9 41 65.9
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 2.2e-09 65.5 39 66.7
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 2.2e-09 65.5 39 69.2
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 2.8e-09 65.1 38 71.1
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 2.8e-09 65.1 38 71.1
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 2.8e-09 65.1 38 71.1
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 2.8e-09 65.1 38 71.1
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 2.8e-09 65.1 38 71.1
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 2.8e-09 65.1 34 73.5
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 3.7e-09 64.7 33 75.8
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 3.7e-09 64.7 33 75.8
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 3.7e-09 64.7 33 75.8
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 3.7e-09 64.7 33 75.8
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 3.7e-09 64.7 36 72.2
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 3.7e-09 64.7 34 76.5
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 3.7e-09 64.7 34 70.6
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 3.7e-09 64.7 34 70.6
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 4.8e-09 64.3 35 68.6
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-09 64.3 40 62.5
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 6.3e-09 63.9 33 72.7
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 8.2e-09 63.5 38 68.4
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 8.2e-09 63.5 40 62.5
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 8.2e-09 63.5 42 59.5
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-08 63.2 34 73.5
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.4e-08 62.8 34 79.4
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 1.4e-08 62.8 38 65.8
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 1.4e-08 62.8 38 65.8
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.8e-08 62.4 42 57.1
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.8e-08 62.4 42 57.1
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.8e-08 62.4 42 57.1
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.8e-08 62.4 42 57.1
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 1.8e-08 62.4 35 68.6
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 2.4e-08 62.0 37 64.9
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 2.4e-08 62.0 40 62.5
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 3.1e-08 61.6 36 72.2
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.1e-08 61.6 40 60.0
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.1e-08 61.6 40 60.0
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.1e-08 61.6 40 60.0
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 4.1e-08 61.2 40 57.5
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.1e-08 61.2 40 57.5
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.3e-08 60.8 40 60.0
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 7.0e-08 60.5 41 53.7
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 9.1e-08 60.1 40 60.0
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 9.1e-08 60.1 40 55.0
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 2.0e-07 58.9 35 62.9
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 2.7e-07 58.5 41 53.7
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 2.7e-07 58.5 33 66.7
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 2.7e-07 58.5 40 52.5
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.5e-07 58.2 30 80.0
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.5e-07 58.2 30 80.0
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.5e-07 58.2 30 80.0
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 5.9e-07 57.4 46 56.5
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 5.9e-07 57.4 46 56.5
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 7.7e-07 57.0 33 66.7
Glyma.10G122700 Glycine max HOM05D001415 ORTHO05D001075 7.7e-07 57.0 33 60.6
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 7.7e-07 57.0 32 65.6
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 7.7e-07 57.0 33 63.6
Ah.08g211680 Amaranthus hybridus HOM05D001415 ORTHO05D001075 1.0e-06 56.6 32 62.5
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 1.0e-06 56.6 35 65.7
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 1.0e-06 56.6 35 65.7
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 1.0e-06 56.6 35 65.7
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 1.0e-06 56.6 35 65.7
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 1.0e-06 56.6 35 65.7
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 1.0e-06 56.6 39 56.4
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 1.0e-06 56.6 40 50.0
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 1.0e-06 56.6 39 56.4
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 1.0e-06 56.6 33 63.6
TPR.G20214 Trifolium pratense HOM05D001415 ORTHO05D001075 1.0e-06 56.6 32 65.6
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.0e-06 56.6 33 63.6
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 1.3e-06 56.2 31 64.5
Phvul.007G235700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.3e-06 56.2 41 56.1
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 1.3e-06 56.2 31 64.5
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.7e-06 55.8 37 62.2
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 1.7e-06 55.8 33 60.6
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 1.7e-06 55.8 33 57.6
CsaV3_6G039840 Cucumis sativus L. HOM05D001415 ORTHO05D001075 2.2e-06 55.5 38 52.6
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 2.2e-06 55.5 32 59.4
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 2.2e-06 55.5 32 59.4
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 2.2e-06 55.5 33 63.6
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 2.2e-06 55.5 32 59.4
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 2.2e-06 55.5 31 64.5
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 2.2e-06 55.5 31 64.5
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 2.9e-06 55.1 31 64.5
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 2.9e-06 55.1 31 64.5
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 2.9e-06 55.1 42 54.8
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 3.8e-06 54.7 32 59.4
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.8e-06 54.7 32 59.4
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.8e-06 54.7 31 64.5
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.8e-06 54.7 32 59.4
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-06 54.7 41 61.0
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-06 54.7 31 64.5
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-06 54.7 31 64.5
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.8e-06 54.7 31 64.5
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.8e-06 54.7 30 70.0
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.8e-06 54.7 30 70.0
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.8e-06 54.7 33 60.6
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 3.8e-06 54.7 31 64.5
HPP92_001492 Vanilla planifolia HOM05D001415 ORTHO05D001075 3.8e-06 54.7 42 45.2
AL5G34120 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 5.0e-06 54.3 41 58.5
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 5.0e-06 54.3 31 64.5
Carub.0005s1977 Capsella rubella HOM05D001415 ORTHO05D001075 5.0e-06 54.3 39 61.5
Glyma.20G182300 Glycine max HOM05D001415 ORTHO05D001075 5.0e-06 54.3 33 60.6
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.0e-06 54.3 31 61.3
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.0e-06 54.3 31 61.3
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.0e-06 54.3 31 61.3
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 5.0e-06 54.3 29 69.0
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 5.0e-06 54.3 32 59.4
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 5.0e-06 54.3 32 59.4
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 5.0e-06 54.3 32 62.5
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 6.5e-06 53.9 29 69.0
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.5e-06 53.9 39 61.5
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.5e-06 53.9 39 61.5
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 6.5e-06 53.9 32 62.5
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 6.5e-06 53.9 29 69.0
Phvul.007G098400 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.5e-06 53.9 35 51.4
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 8.5e-06 53.5 32 59.4
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 8.5e-06 53.5 32 62.5
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 8.5e-06 53.5 32 59.4


User provided reference genes

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