Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 2503.0 1258 100.0
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 2132.5 1273 83.9
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1999.9 1264 80.3
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1623.6 1291 64.4
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1582.4 1257 64.1
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1511.5 1291 59.9
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1510.4 1307 59.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1510.0 1291 59.4
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1504.2 1307 59.6
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1504.2 1278 60.5
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1499.2 1292 59.7
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1497.3 1281 59.5
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1496.1 1279 60.4
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1494.6 1352 58.1
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1493.4 1289 60.2
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1492.6 1265 60.6
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1490.7 1293 60.5
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1488.8 1297 59.5
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1488.4 1294 57.3
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1483.8 1284 60.2
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1483.4 1293 59.4
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1483.0 1293 58.9
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1477.6 1288 59.0
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1476.1 1303 59.3
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1469.9 1293 59.3
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1465.7 1319 57.7
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1458.7 1293 58.5
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1456.0 1290 58.5
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1448.0 1286 58.2
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1447.2 1303 58.7
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1445.6 1288 57.9
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1445.3 1288 57.8
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1442.9 1287 57.6
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1441.4 1288 59.0
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1431.8 1290 58.1
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1429.1 1290 58.1
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1428.3 1288 57.2
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1425.2 1283 57.1
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1424.1 1287 57.5
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1424.1 1325 56.8
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1422.1 1287 56.6
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1421.0 1286 57.5
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1418.7 1287 56.5
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1417.9 1293 57.6
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1415.6 1238 59.0
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1414.8 1288 57.0
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1412.5 1287 57.3
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1411.7 1289 56.9
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1411.7 1286 57.5
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1409.8 1301 56.7
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1400.2 1074 64.9
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1400.2 1288 57.0
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1394.0 1377 54.0
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1394.0 1304 55.6
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1393.6 1311 56.1
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1387.1 1350 54.7
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1381.3 1308 55.8
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1379.8 1288 55.7
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1377.1 1410 53.9
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1371.3 1290 56.0
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1365.5 1188 58.8
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1362.4 1313 54.4
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1360.9 1298 55.4
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1358.2 1308 54.4
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1358.2 1292 56.7
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1351.3 1299 55.4
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1347.0 1115 62.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1346.6 1267 55.9
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1343.2 1291 54.7
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1342.8 1156 59.6
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1339.7 1287 54.5
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1339.3 1109 60.9
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1336.6 1288 54.3
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1335.5 1286 54.4
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1333.2 1288 54.2
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1333.2 1287 54.4
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1330.9 1290 54.0
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1329.7 1314 53.2
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1321.2 1290 54.0
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1319.7 1290 53.6
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1317.8 1292 53.9
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1315.4 1294 52.0
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1314.3 1290 53.5
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1313.1 1289 52.5
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1303.1 1272 53.8
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1298.1 1299 53.3
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1294.3 1114 60.6
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1281.5 1282 53.7
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1255.4 1114 58.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1250.0 1307 51.6
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1248.8 1292 50.5
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1245.3 1202 55.3
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1226.5 1270 50.9
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1223.0 1398 49.5
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1211.8 1288 50.9
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1199.1 1275 50.0
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1192.2 1284 48.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1159.4 1111 56.6
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1145.6 1150 54.9
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1140.2 1072 54.1
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1135.6 1293 47.6
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1087.8 1327 46.6
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.3e-269 932.6 914 52.8
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 2.6e-258 896.3 1346 38.6
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 3.9e-254 882.5 1364 39.8
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.9e-249 866.3 845 53.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.4e-248 864.0 648 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 2.8e-228 796.6 1117 40.4
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.0e-219 765.0 739 53.0
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 2.8e-196 690.3 1289 36.0
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.4e-195 688.0 935 42.6
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.0e-153 548.9 565 50.6
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 1.7e-153 548.1 349 80.2
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.1e-151 541.2 654 46.0
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 7.3e-144 516.2 379 69.7
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 6.9e-126 456.4 504 53.4
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.9e-115 421.8 332 62.3
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 3.8e-108 397.5 461 47.1
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 5.0e-100 370.5 1080 26.8
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 6.1e-98 363.6 222 74.3
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.0e-89 334.7 421 44.2
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.1e-86 324.3 476 39.9
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 8.5e-84 316.6 209 73.2
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.8e-78 298.9 209 69.9
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.0e-77 295.4 214 68.7
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.5e-72 279.3 1041 24.5
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 7.7e-69 266.9 163 73.6
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 8.0e-66 256.9 288 46.5
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 9.1e-62 243.4 142 76.1
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.0e-60 237.7 246 48.0
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 7.0e-54 217.2 983 23.4
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 2.6e-48 198.7 727 26.3
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 6.8e-41 174.1 180 49.4
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-34 153.3 110 64.5
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.1e-34 152.5 211 39.3
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.6e-34 151.8 205 42.4
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-33 150.2 142 57.0
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.5e-32 146.4 92 78.3
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.4e-32 144.8 118 55.1
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.4e-30 139.0 114 73.7
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 6.0e-29 134.4 114 60.5
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.1e-27 130.2 420 27.1
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.2e-26 126.7 179 39.1
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 6.2e-26 124.4 134 50.0
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.0e-24 119.4 209 37.3
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 2.6e-24 119.0 113 69.0
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.1e-22 113.6 142 44.4
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.9e-22 112.8 79 67.1
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 6.0e-21 107.8 86 68.6
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 6.6e-20 104.4 89 56.2
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 2.8e-18 99.0 74 64.9
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.2e-16 93.6 85 51.8
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 1.5e-16 93.2 223 32.3
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 7.6e-16 90.9 134 44.8
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 3.2e-14 85.5 65 56.9
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 5.1e-12 78.2 200 32.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 6.6e-12 77.8 57 59.6
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.4e-09 70.1 45 75.6
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 5.8e-08 64.7 81 64.2
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.9e-07 62.4 73 63.0
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 6.4e-07 61.2 41 65.9
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 2.4e-06 59.3 53 60.4
Lsat_1_v5_gn_4_22880 Lactuca sativa HOM05D004363 ORTHO05D005110 9.3e-06 57.4 40 70.0


User provided reference genes

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