Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 3.4e-129 464.9 224 100.0
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.8e-96 355.1 224 74.1
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 4.4e-84 315.1 220 67.7
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.3e-83 313.5 218 67.0
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.8e-82 309.7 226 66.4
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.7e-81 305.8 226 66.4
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 5.9e-81 304.7 224 65.2
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.9e-81 304.7 226 65.9
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-80 303.5 230 65.2
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.7e-80 303.1 229 62.9
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 2.3e-80 302.8 224 67.4
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.0e-80 302.4 229 62.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 3.9e-80 302.0 229 64.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 3.9e-80 302.0 229 64.6
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 6.6e-80 301.2 229 62.4
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.9e-79 299.7 226 65.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.5e-79 299.3 229 62.9
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.3e-79 298.9 228 65.4
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 4.3e-79 298.5 229 62.9
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 5.6e-79 298.1 229 62.9
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.2e-78 297.0 215 63.3
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.2e-78 297.0 229 64.2
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.6e-78 296.6 229 63.3
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.7e-78 295.0 227 63.0
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 8.0e-78 294.3 229 61.1
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.4e-77 293.5 225 63.1
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 1.8e-77 293.1 228 61.8
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 6.8e-77 291.2 229 60.7
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 8.9e-77 290.8 224 61.6
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.2e-76 290.4 223 60.5
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.5e-76 290.0 227 61.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.5e-76 290.0 229 62.0
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 2.6e-76 289.3 229 62.4
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 5.8e-76 288.1 227 60.8
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 9.8e-76 287.3 228 61.0
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.2e-75 286.2 229 58.1
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 3.7e-75 285.4 226 61.9
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 3.7e-75 285.4 229 62.4
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-74 283.9 226 62.4
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.1e-74 283.9 227 60.4
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.4e-74 283.5 227 60.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.9e-74 283.1 228 58.8
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.4e-74 282.7 223 60.5
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 3.2e-74 282.3 221 62.0
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.2e-74 282.3 229 60.3
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 7.0e-74 281.2 229 59.0
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 7.0e-74 281.2 228 58.3
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.0e-73 279.6 227 59.0
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.0e-73 278.1 225 59.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.0e-72 277.3 223 61.9
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.3e-72 276.9 224 60.7
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.0e-72 275.8 228 59.6
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.9e-72 275.4 224 60.7
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.9e-72 275.4 221 61.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.1e-71 273.9 221 60.6
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.5e-71 273.5 220 56.8
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-71 273.5 224 60.7
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-71 273.5 224 60.7
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 9.5e-71 270.8 208 62.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-70 270.0 222 58.6
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-70 269.2 187 67.4
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 2.8e-70 269.2 227 59.9
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 8.1e-70 267.7 229 57.2
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.8e-69 266.5 230 58.3
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.3e-69 266.2 200 63.0
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 3.1e-69 265.8 225 54.7
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 4.0e-69 265.4 223 59.6
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 6.8e-69 264.6 223 59.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.9e-69 264.2 222 58.6
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.5e-68 263.5 222 56.3
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.4e-68 261.9 226 58.4
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 4.4e-68 261.9 222 57.2
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 5.8e-68 261.5 226 58.0
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 7.5e-68 261.2 223 58.7
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.7e-67 260.0 220 56.8
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.2e-67 259.6 220 55.9
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.9e-67 258.5 220 55.9
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 6.4e-67 258.1 225 54.7
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.1e-66 257.3 204 60.8
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.9e-66 256.5 224 53.6
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 9.2e-66 254.2 224 55.4
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.2e-65 253.8 224 55.4
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 3.0e-64 249.2 224 53.6
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 3.0e-64 249.2 220 54.1
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 5.1e-64 248.4 220 55.0
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 2.5e-63 246.1 226 55.3
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 5.6e-63 245.0 224 53.1
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 5.6e-63 245.0 216 55.6
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 3.6e-62 242.3 224 52.7
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 4.7e-62 241.9 227 52.9
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.1e-61 239.2 219 53.9
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-60 237.3 220 56.4
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 6.4e-59 231.5 220 52.3
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 4.1e-58 228.8 224 51.3
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 4.6e-57 225.3 220 54.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 4.7e-54 215.3 222 50.9
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 8.9e-53 211.1 226 48.2
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 2.0e-52 209.9 247 42.9
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.0e-52 209.9 218 50.0
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.7e-51 206.8 141 68.1
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 3.8e-51 205.7 236 44.9
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 5.4e-50 201.8 236 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.9e-47 193.4 227 44.1
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 3.3e-47 192.6 226 41.2
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.8e-45 186.8 237 41.4
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.1e-45 186.0 253 39.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.0e-45 185.7 219 41.1
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 5.3e-45 185.3 224 44.2
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.3e-45 185.3 254 40.2
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 9.0e-45 184.5 224 41.1
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.0e-44 183.3 223 42.2
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.8e-44 181.8 220 41.4
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.4e-43 177.9 242 38.4
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.1e-41 173.3 221 45.2
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 7.9e-41 171.4 258 37.6
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.0e-40 171.0 231 39.8
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.0e-40 169.5 224 39.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.1e-40 168.7 203 42.9
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 6.6e-40 168.3 233 41.2
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 8.7e-40 167.9 225 39.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 9.6e-39 164.5 258 36.4
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 2.1e-38 163.3 223 38.1
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.2e-38 161.8 259 34.7
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 5.3e-37 158.7 170 45.3
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 5.3e-37 158.7 170 45.3
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.9e-37 158.3 259 34.4
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.2e-36 157.5 145 51.0
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.5e-36 157.1 231 36.4
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 4.9e-35 152.1 218 39.9
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 6.4e-35 151.8 208 38.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.4e-34 149.8 227 41.9
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 2.4e-34 149.8 224 35.3
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 7.1e-34 148.3 203 41.9
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.6e-33 147.1 208 38.5
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-33 146.4 227 41.4
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.6e-33 145.6 254 34.3
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.3e-32 143.3 210 36.7
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 2.3e-32 143.3 157 45.9
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.9e-31 140.2 213 34.7
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 7.4e-31 138.3 145 45.5
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 2.8e-30 136.3 155 43.9
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 4.8e-30 135.6 151 43.7
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 8.1e-30 134.8 157 41.4
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.8e-29 133.7 244 33.2
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.4e-28 129.4 132 49.2
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 7.6e-28 128.3 99 58.6
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.2e-27 126.7 132 47.7
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 8.4e-27 124.8 265 30.9
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.8e-24 117.1 107 51.4
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 3.0e-24 116.3 147 42.9
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.9e-23 113.6 142 39.4
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.9e-23 113.6 146 40.4
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 4.3e-23 112.5 146 39.7
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 7.4e-23 111.7 202 36.1
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.7e-22 109.4 217 29.5
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 4.6e-17 92.4 126 34.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.0e-16 89.7 218 32.6
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.4e-13 80.9 150 29.3
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.9e-13 78.6 74 51.4
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.9e-12 75.5 105 36.2
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.5e-11 71.6 83 41.0
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 8.5e-11 71.6 71 42.3
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.5e-10 70.1 239 25.9
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.0e-08 64.7 88 36.4


User provided reference genes

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