Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 9.5e-104 380.2 191 100.0
HanXRQChr06g0180121 Helianthus annuus HOM05D000809 ORTHO05D001196 1.2e-29 134.0 90 74.4
HanXRQChr06g0180151 Helianthus annuus HOM05D000809 ORTHO05D001196 1.2e-29 134.0 90 74.4
HanXRQChr06g0180171 Helianthus annuus HOM05D000809 ORTHO05D001196 1.3e-28 130.6 92 73.9
HanXRQChr12g0354961 Helianthus annuus HOM05D000809 ORTHO05D001196 1.3e-28 130.6 92 73.9
HanXRQChr06g0180181 Helianthus annuus HOM05D000809 ORTHO05D001196 2.1e-26 123.2 88 72.7
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.6e-16 89.7 105 50.5
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.7e-15 85.9 103 49.5
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.3e-15 85.1 95 50.5
HanXRQChr05g0138011 Helianthus annuus HOM05D000809 ORTHO05D001196 9.1e-14 81.3 71 57.7
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.2e-13 80.9 99 45.5
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.6e-13 80.5 95 49.5
Lsat_1_v5_gn_8_93421 Lactuca sativa HOM05D000809 ORTHO05D001196 5.0e-12 75.5 76 47.4
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 6.5e-12 75.1 103 41.7
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.5e-11 73.9 103 41.7
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.9e-11 73.6 95 42.1
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 3.2e-11 72.8 108 41.7
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 4.2e-11 72.4 103 41.7
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 4.2e-11 72.4 103 41.7
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 5.5e-11 72.0 103 39.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 5.5e-11 72.0 108 41.7
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 7.2e-11 71.6 107 41.1
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 7.2e-11 71.6 98 43.9
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 7.2e-11 71.6 95 43.2
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.2e-10 70.9 95 42.1
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.2e-10 70.9 107 41.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.2e-10 70.9 95 43.2
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.6e-10 70.5 101 41.6
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.6e-10 70.5 103 40.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 2.1e-10 70.1 95 40.0
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 2.1e-10 70.1 86 45.3
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.1e-10 70.1 103 40.8
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.1e-10 70.1 103 40.8
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 2.7e-10 69.7 98 43.9
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.7e-10 69.7 103 40.8
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.6e-10 69.3 98 41.8
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.6e-10 69.3 103 40.8
HanXRQChr10g0317751 Helianthus annuus HOM05D000809 ORTHO05D001196 3.6e-10 69.3 77 44.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 3.6e-10 69.3 95 42.1
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 6.1e-10 68.6 101 42.6
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 8.0e-10 68.2 95 43.2
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 1.4e-09 67.4 95 43.2
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.8e-09 67.0 94 40.4
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 2.3e-09 66.6 102 39.2
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.0e-09 66.2 95 41.1
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 4.0e-09 65.9 108 36.1
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 4.0e-09 65.9 103 38.8
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 5.2e-09 65.5 107 39.3
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 5.2e-09 65.5 95 42.1
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 5.2e-09 65.5 103 38.8
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 5.2e-09 65.5 106 38.7
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 6.8e-09 65.1 103 37.9
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 6.8e-09 65.1 102 39.2
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.8e-09 64.7 100 41.0
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 8.8e-09 64.7 95 40.0
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.2e-08 64.3 95 42.1
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.2e-08 64.3 108 38.9
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.2e-08 64.3 95 40.0
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.5e-08 63.9 95 42.1
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 2.0e-08 63.5 103 37.9
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.0e-08 63.5 103 36.9
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.0e-08 63.5 98 40.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.6e-08 63.2 95 41.1
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.6e-08 63.2 95 42.1
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.6e-08 63.2 103 36.9
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.6e-08 63.2 95 41.1
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.6e-08 63.2 87 37.9
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 3.4e-08 62.8 95 40.0
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.4e-08 62.4 98 38.8
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 4.4e-08 62.4 94 40.4
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 4.4e-08 62.4 95 41.1
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 5.7e-08 62.0 102 38.2
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 5.7e-08 62.0 103 35.9
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.7e-08 62.0 95 41.1
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 5.7e-08 62.0 101 36.6
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 7.5e-08 61.6 102 38.2
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 7.5e-08 61.6 102 38.2
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 9.8e-08 61.2 104 40.4
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.3e-07 60.8 87 40.2
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 1.7e-07 60.5 94 40.4
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.8e-07 59.7 95 40.0
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.8e-07 59.7 87 37.9
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.7e-07 59.3 95 34.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 4.8e-07 58.9 101 35.6
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 4.8e-07 58.9 103 34.0
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 6.3e-07 58.5 103 35.0
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 8.3e-07 58.2 90 38.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 8.3e-07 58.2 97 38.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.1e-06 57.8 103 35.9
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.1e-06 57.8 104 35.6
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.8e-06 57.0 97 33.0
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.8e-06 57.0 98 35.7
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.8e-06 57.0 112 33.0
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 3.1e-06 56.2 97 35.1
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 3.1e-06 56.2 89 42.7
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 4.1e-06 55.8 103 32.0
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 4.1e-06 55.8 95 35.8
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.4e-06 55.5 94 38.3
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 9.1e-06 54.7 95 36.8


User provided reference genes

Program Settings