Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0047701 Helianthus annuus HOM05D002580 ORTHO05D002811 1.7e-78 295.8 141 100.0
HanXRQChr05g0152131 Helianthus annuus HOM05D002580 ORTHO05D002811 1.6e-36 156.4 134 59.0
ECA233G2585 Erigeron canadensis HOM05D002580 ORTHO05D002811 3.1e-35 152.1 132 59.8
Lsat_1_v5_gn_6_11320 Lactuca sativa HOM05D002580 ORTHO05D002811 5.3e-35 151.4 115 62.6
Dinv30245 Davidia involucrata HOM05D002580 ORTHO05D002811 2.8e-28 129.0 112 51.8
Sc23g0005840 Simmondsia chinensis HOM05D002580 ORTHO05D002811 6.9e-27 124.4 110 48.2
CiPaw.07G208200 Carya illinoinensis HOM05D002580 ORTHO05D002811 5.9e-26 121.3 110 50.0
Prupe.1G454000 Prunus persica HOM05D002580 ORTHO05D002811 5.9e-26 121.3 128 45.3
Dinv14215 Davidia involucrata HOM05D002580 ORTHO05D002811 1.0e-25 120.6 113 48.7
MD15G1099300 Malus domestica HOM05D002580 ORTHO05D002811 1.0e-25 120.6 110 47.3
Sed0003524 Sechium edule HOM05D002580 ORTHO05D002811 1.0e-25 120.6 132 45.5
CiPaw.08G022800 Carya illinoinensis HOM05D002580 ORTHO05D002811 2.2e-25 119.4 110 50.0
ClCG11G013960 Citrullus lanatus HOM05D002580 ORTHO05D002811 2.2e-25 119.4 109 47.7
Oeu012174.1 Olea europaea HOM05D002580 ORTHO05D002811 2.2e-25 119.4 134 44.8
TAR624G0927 Trochodendron aralioides HOM05D002580 ORTHO05D002811 2.2e-25 119.4 113 47.8
Manes.03G065900 Manihot esculenta HOM05D002580 ORTHO05D002811 2.9e-25 119.0 126 44.4
QL12p026165 Quercus lobata HOM05D002580 ORTHO05D002811 5.0e-25 118.2 110 47.3
MELO3C003593.2 Cucumis melo HOM05D002580 ORTHO05D002811 6.5e-25 117.9 133 43.6
Actinidia15723 Actinidia chinensis HOM05D002580 ORTHO05D002811 1.1e-24 117.1 111 46.8
CANSAT25G2149 Cannabis sativa HOM05D002580 ORTHO05D002811 1.4e-24 116.7 110 44.5
Nn8g41288 Nelumbo nucifera HOM05D002580 ORTHO05D002811 1.9e-24 116.3 110 47.3
TWI34G0308 Tripterygium wilfordii HOM05D002580 ORTHO05D002811 2.5e-24 115.9 108 48.1
MSTRG.25898 Avicennia marina HOM05D002580 ORTHO05D002811 5.5e-24 114.8 108 48.1
TAR636G1406 Trochodendron aralioides HOM05D002580 ORTHO05D002811 5.5e-24 114.8 113 45.1
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 9.4e-24 114.0 133 42.1
Sabra06G0190900 Salix brachista HOM05D002580 ORTHO05D002811 1.6e-23 113.2 110 44.5
MBI19_g43183_MAGBIO Magnolia biondii HOM05D002580 ORTHO05D002811 2.1e-23 112.8 110 45.5
Sed0015599 Sechium edule HOM05D002580 ORTHO05D002811 2.1e-23 112.8 133 42.1
RcHm_v2.0_Chr6g0305631 Rosa chinensis HOM05D002580 ORTHO05D002811 4.6e-23 111.7 129 42.6
TPR.G1336 Trifolium pratense HOM05D002580 ORTHO05D002811 4.6e-23 111.7 129 41.1
CDE06G0931 Ceratophyllum demersum HOM05D002580 ORTHO05D002811 1.4e-22 110.2 110 46.4
Hma1.2p1_0140F.1_g063640 Hydrangea macrophylla HOM05D002580 ORTHO05D002811 1.4e-22 110.2 116 44.8
Nitab4.5_0003956g0020 Nicotiana tabacum HOM05D002580 ORTHO05D002811 3.0e-22 109.0 110 47.3
Peaxi162Scf00276g01014 Petunia axillaris HOM05D002580 ORTHO05D002811 3.0e-22 109.0 110 48.2
CAN.G309.77 Capsicum annuum HOM05D002580 ORTHO05D002811 5.1e-22 108.2 110 46.4
PSO782G1202 Papaver somniferum HOM05D002580 ORTHO05D002811 5.1e-22 108.2 110 40.0
Nitab4.5_0005666g0040 Nicotiana tabacum HOM05D002580 ORTHO05D002811 8.8e-22 107.5 131 44.3
PSO063G1348 Papaver somniferum HOM05D002580 ORTHO05D002811 8.8e-22 107.5 110 40.9
Potri.006G244000 Populus trichocarpa HOM05D002580 ORTHO05D002811 1.1e-21 107.1 115 42.6
Carub.0006s0992 Capsella rubella HOM05D002580 ORTHO05D002811 1.5e-21 106.7 120 40.0
vmacro05354 Vaccinium macrocarpon HOM05D002580 ORTHO05D002811 1.5e-21 106.7 108 47.2
CSS0037135 Camellia sinensis var. sinensis HOM05D002580 ORTHO05D002811 2.6e-21 105.9 110 40.9
GSVIVG01035711001 Vitis vinifera HOM05D002580 ORTHO05D002811 3.3e-21 105.5 104 41.3
Potri.018G036500 Populus trichocarpa HOM05D002580 ORTHO05D002811 4.4e-21 105.1 121 40.5
Solyc11g012810.2 Solanum lycopersicum HOM05D002580 ORTHO05D002811 4.4e-21 105.1 110 46.4
Sopen11g007550 Solanum pennellii HOM05D002580 ORTHO05D002811 9.7e-21 104.0 110 46.4
Aqoxy7G00228 Aquilegia oxysepala HOM05D002580 ORTHO05D002811 1.3e-20 103.6 110 42.7
Psat0s1478g0400 Pisum sativum HOM05D002580 ORTHO05D002811 1.3e-20 103.6 129 38.8
Dinv30555 Davidia involucrata HOM05D002580 ORTHO05D002811 2.8e-20 102.4 110 39.1
Sabra18G0037100 Salix brachista HOM05D002580 ORTHO05D002811 2.8e-20 102.4 93 48.4
Actinidia15808 Actinidia chinensis HOM05D002580 ORTHO05D002811 3.7e-20 102.1 137 38.0
Ca_15624_v3 Cicer arietinum L. HOM05D002580 ORTHO05D002811 3.7e-20 102.1 129 37.2
TWI63G0291 Tripterygium wilfordii HOM05D002580 ORTHO05D002811 3.7e-20 102.1 105 42.9
TAR636G1605 Trochodendron aralioides HOM05D002580 ORTHO05D005268 4.8e-20 101.7 105 42.9
CDE07G1650 Ceratophyllum demersum HOM05D002580 ORTHO05D002811 6.3e-20 101.3 93 49.5
AL6G22130 Arabidopsis lyrata HOM05D002580 ORTHO05D002811 8.2e-20 100.9 119 39.5
AT5G11470 Arabidopsis thaliana HOM05D002580 ORTHO05D002811 8.2e-20 100.9 119 39.5
Migut.A00235 Erythranthe guttata HOM05D002580 ORTHO05D002811 1.1e-19 100.5 108 45.4
Ah.09g229390 Amaranthus hybridus HOM05D002580 ORTHO05D002811 4.1e-19 98.6 95 46.3
Ah.14g085370 Amaranthus hybridus HOM05D002580 ORTHO05D002811 4.1e-19 98.6 99 42.4
Duzib168G2006 Durio zibethinus HOM05D002580 ORTHO05D002811 5.3e-19 98.2 106 41.5
Thhalv10005547m.g Eutrema salsugineum HOM05D002580 ORTHO05D002811 5.3e-19 98.2 115 39.1
CSS0024422 Camellia sinensis var. sinensis HOM05D002580 ORTHO05D002811 6.9e-19 97.8 93 43.0
AUR62027415 Chenopodium quinoa HOM05D002580 ORTHO05D002811 6.9e-19 97.8 140 34.3
Thecc.09G038500 Theobroma cacao HOM05D002580 ORTHO05D002811 6.9e-19 97.8 106 42.5
Atru.chr7.2296 Acer truncatum HOM05D002580 ORTHO05D002811 1.2e-18 97.1 133 39.8
FvH4_2g36260 Fragaria vesca HOM05D002580 ORTHO05D002811 1.2e-18 97.1 110 38.2
Gohir.D05G050800 Gossypium hirsutum HOM05D002580 ORTHO05D002811 1.2e-18 97.1 106 40.6
Gorai.009G052400 Gossypium raimondii HOM05D002580 ORTHO05D002811 1.2e-18 97.1 106 40.6
Glyma.06G081000 Glycine max HOM05D002580 ORTHO05D002811 2.0e-18 96.3 129 38.0
Medtr3g109470 Medicago truncatula HOM05D002580 ORTHO05D002811 2.0e-18 96.3 129 37.2
SEGI_02130 Sequoiadendron giganteum HOM05D002580 ORTHO05D002811 2.0e-18 96.3 131 41.2
Aa31LG3G15720 Aethionema arabicum HOM05D002580 ORTHO05D002811 2.6e-18 95.9 115 36.5
QL05p027138 Quercus lobata HOM05D002580 ORTHO05D002811 2.6e-18 95.9 122 35.2
EL10Ac8g19304 Beta vulgaris HOM05D002580 ORTHO05D002811 3.4e-18 95.5 93 45.2
Thecc.06G076800 Theobroma cacao HOM05D002580 ORTHO05D002811 3.4e-18 95.5 107 37.4
Gohir.A05G048900 Gossypium hirsutum HOM05D002580 ORTHO05D002811 4.5e-18 95.1 106 40.6
Hund14504 Selenicereus undatus HOM05D002580 ORTHO05D002811 4.5e-18 95.1 138 39.1
Migut.B01176 Erythranthe guttata HOM05D002580 ORTHO05D002811 5.9e-18 94.7 118 40.7
Rhsim08G0217300 Rhododendron simsii HOM05D002580 ORTHO05D002811 5.9e-18 94.7 93 45.2
Phvul.009G105200 Phaseolus vulgaris HOM05D002580 ORTHO05D002811 1.0e-17 94.0 128 35.2
Nn2g11906 Nelumbo nucifera HOM05D002580 ORTHO05D002811 1.3e-17 93.6 134 37.3
ATR0026G056 Amborella trichopoda HOM05D002580 ORTHO05D002811 1.7e-17 93.2 129 36.4
C09p06780 Brassica napus HOM05D002580 ORTHO05D002811 1.7e-17 93.2 134 37.3
BolC9t53599H Brassica oleracea HOM05D002580 ORTHO05D002811 1.7e-17 93.2 134 37.3
SalBow4G1139 Salvia bowleyana HOM05D002580 ORTHO05D002811 2.9e-17 92.4 99 43.4
DCAR_016251 Daucus carota HOM05D002580 ORTHO05D002811 5.0e-17 91.7 106 42.5
TWI75G0652 Tripterygium wilfordii HOM05D002580 ORTHO05D002811 6.5e-17 91.3 110 36.4
FAN27G2969 Fragaria x ananassa HOM05D002580 ORTHO05D002811 8.5e-17 90.9 118 36.4
Gohir.D05G125300 Gossypium hirsutum HOM05D002580 ORTHO05D002811 8.5e-17 90.9 110 38.2
Cpa.g.sc78.96 Carica papaya HOM05D002580 ORTHO05D002811 1.1e-16 90.5 93 44.1
Lj3g0000588 Lotus japonicus HOM05D002580 ORTHO05D002811 1.1e-16 90.5 110 33.6
BraA09t36257Z Brassica rapa HOM05D002580 ORTHO05D002811 1.4e-16 90.1 134 35.8
Lj5A67G52 Lonicera japonica HOM05D002580 ORTHO05D002811 1.4e-16 90.1 107 38.3
Psat5g300800 Pisum sativum HOM05D002580 ORTHO05D002811 1.4e-16 90.1 110 36.4
A09p06150 Brassica napus HOM05D002580 ORTHO05D002811 2.5e-16 89.4 125 34.4
Gohir.A05G124300 Gossypium hirsutum HOM05D002580 ORTHO05D002811 2.5e-16 89.4 110 37.3
Gorai.009G129300 Gossypium raimondii HOM05D002580 ORTHO05D002811 3.2e-16 89.0 105 38.1
Lj1g0017255 Lotus japonicus HOM05D002580 ORTHO05D002811 3.2e-16 89.0 105 36.2
TPR.G28303 Trifolium pratense HOM05D002580 ORTHO05D002811 3.2e-16 89.0 110 33.6
Medtr2g062470 Medicago truncatula HOM05D002580 ORTHO05D002811 4.2e-16 88.6 110 33.6
SGA_v2.0_scaffold124G33602 Striga asiatica HOM05D002580 ORTHO05D002811 4.2e-16 88.6 118 41.5
TPR.G37286 Trifolium pratense HOM05D002580 ORTHO05D002811 4.2e-16 88.6 110 32.7
Glyma.13G362500 Glycine max HOM05D002580 ORTHO05D002811 7.2e-16 87.8 107 33.6
Sp2g21930 Schrenkiella parvula HOM05D002580 ORTHO05D002811 9.4e-16 87.4 140 35.0
GSVIVG01017217001 Vitis vinifera HOM05D002580 ORTHO05D002811 1.2e-15 87.0 95 40.0
Eucgr.C01577 Eucalyptus grandis HOM05D002580 ORTHO05D002811 1.6e-15 86.7 131 36.6
Lalb_Chr08g0243341 Lupinus albus HOM05D002580 ORTHO05D002811 1.6e-15 86.7 89 43.8
PSO832G1674 Papaver somniferum HOM05D002580 ORTHO05D002811 2.7e-15 85.9 105 39.0
A10p26270 Brassica napus HOM05D002580 ORTHO05D002811 3.6e-15 85.5 135 34.1
BcaC04g19223 Brassica carinata HOM05D002580 ORTHO05D002811 4.7e-15 85.1 110 35.5
C09p65390 Brassica napus HOM05D002580 ORTHO05D002811 4.7e-15 85.1 110 35.5
Duzib160G0035 Durio zibethinus HOM05D002580 ORTHO05D002811 6.1e-15 84.7 104 37.5
RcHm_v2.0_Chr2g0136961 Rosa chinensis HOM05D002580 ORTHO05D002811 7.9e-15 84.3 106 34.0
SEGI_39333 Sequoiadendron giganteum HOM05D002580 ORTHO05D002811 1.0e-14 84.0 94 39.4
BcaB08g37056 Brassica carinata HOM05D002580 ORTHO05D002811 1.4e-14 83.6 110 34.5
Solyc02g069810.3 Solanum lycopersicum HOM05D002580 ORTHO05D002811 1.4e-14 83.6 115 34.8
PSO591G0113 Papaver somniferum HOM05D002580 ORTHO05D002811 1.8e-14 83.2 105 37.1
Sopen02g018970 Solanum pennellii HOM05D002580 ORTHO05D002811 1.8e-14 83.2 110 34.5
Lalb_Chr14g0373611 Lupinus albus HOM05D002580 ORTHO05D002811 2.3e-14 82.8 108 33.3
Sp6g32130 Schrenkiella parvula HOM05D002580 ORTHO05D002811 2.3e-14 82.8 115 33.0
Cc00_g03580 Coffea canephora HOM05D002580 ORTHO05D002811 5.2e-14 81.6 97 36.1
BcaB04g19784 Brassica carinata HOM05D002580 ORTHO05D002811 6.7e-14 81.3 132 33.3
FvH4_6g30540 Fragaria vesca HOM05D002580 ORTHO05D002811 6.7e-14 81.3 106 34.0
Carub.0006s2347 Capsella rubella HOM05D002580 ORTHO05D002811 1.5e-13 80.1 112 38.4
CAN.G954.28 Capsicum annuum HOM05D002580 ORTHO05D002811 1.5e-13 80.1 132 31.8
Ca_01092_v3 Cicer arietinum L. HOM05D002580 ORTHO05D002811 1.5e-13 80.1 93 37.6
A03p05010 Brassica napus HOM05D002580 ORTHO05D002811 2.0e-13 79.7 115 31.3
BraA03t09836Z Brassica rapa HOM05D002580 ORTHO05D002811 2.0e-13 79.7 115 31.3
BcaB01g05483 Brassica carinata HOM05D002580 ORTHO05D002811 2.6e-13 79.3 115 31.3
C03p05750 Brassica napus HOM05D002580 ORTHO05D002811 2.6e-13 79.3 115 31.3
BolC3t13088H Brassica oleracea HOM05D002580 ORTHO05D002811 2.6e-13 79.3 115 31.3
SHI18640 Sapria himalayana HOM05D002580 ORTHO05D002811 2.6e-13 79.3 103 36.9
Phvul.005G174200 Phaseolus vulgaris HOM05D002580 ORTHO05D002811 4.4e-13 78.6 107 32.7
HPP92_023329 Vanilla planifolia HOM05D002580 ORTHO05D002811 4.4e-13 78.6 99 33.3
CARHR201760 Cardamine hirsuta HOM05D002580 ORTHO05D002811 5.7e-13 78.2 92 35.9
COL.COLO4_12866 Corchorus olitorius HOM05D002580 ORTHO05D002811 7.4e-13 77.8 96 39.6
Thhalv10012816m.g Eutrema salsugineum HOM05D002580 ORTHO05D002811 7.4e-13 77.8 93 36.6
Hund11333 Selenicereus undatus HOM05D002580 ORTHO05D002811 9.7e-13 77.4 89 41.6
Lalb_Chr23g0269381 Lupinus albus HOM05D002580 ORTHO05D002811 1.3e-12 77.0 84 40.5
Prupe.3G077800 Prunus persica HOM05D002580 ORTHO05D002811 1.3e-12 77.0 101 32.7
PSO210G2865 Papaver somniferum HOM05D002580 ORTHO05D002811 1.7e-12 76.6 91 40.7
Hund00568 Selenicereus undatus HOM05D002580 ORTHO05D002811 1.7e-12 76.6 95 38.9
Cc08_g08490 Coffea canephora HOM05D002580 ORTHO05D002811 2.2e-12 76.3 130 34.6
THA.LOC104815541 Tarenaya hassleriana HOM05D002580 ORTHO05D002811 2.2e-12 76.3 93 39.8
AL3G28230 Arabidopsis lyrata HOM05D002580 ORTHO05D002811 3.7e-12 75.5 104 36.5
BcaB01g06307 Brassica carinata HOM05D002580 ORTHO05D002811 3.7e-12 75.5 99 32.3
MD08G1120100 Malus domestica HOM05D002580 ORTHO05D002811 3.7e-12 75.5 89 40.4
BraA10t44684Z Brassica rapa HOM05D002580 ORTHO05D002811 4.8e-12 75.1 93 34.4
Ciclev10007839m.g Citrus clementina HOM05D002580 ORTHO05D002811 6.3e-12 74.7 92 38.0
DCAR_004511 Daucus carota HOM05D002580 ORTHO05D002811 6.3e-12 74.7 90 43.3
CANSAT56G3720 Cannabis sativa HOM05D002580 ORTHO05D002811 1.4e-11 73.6 110 30.9
FAN14G3186 Fragaria x ananassa HOM05D002580 ORTHO05D002811 2.4e-11 72.8 93 34.4
Lsat_1_v5_gn_5_132781 Lactuca sativa HOM05D002580 ORTHO05D002811 2.4e-11 72.8 134 30.6
Peaxi162Scf00670g00342 Petunia axillaris HOM05D002580 ORTHO05D002811 3.1e-11 72.4 91 35.2
BolC9t59364H Brassica oleracea HOM05D002580 ORTHO05D002811 5.3e-11 71.6 93 33.3
AT3G15605 Arabidopsis thaliana HOM05D002580 ORTHO05D002811 9.1e-11 70.9 107 34.6
AUR62016404 Chenopodium quinoa HOM05D002580 ORTHO05D002811 1.2e-10 70.5 108 33.3
MD09G1219000 Malus domestica HOM05D002580 ORTHO05D002811 2.6e-10 69.3 102 31.4
VMungo1080G1864 Vigna mungo HOM05D002580 ORTHO05D002811 3.5e-10 68.9 99 30.3
AUR62011589 Chenopodium quinoa HOM05D002580 ORTHO05D002811 4.5e-10 68.6 108 32.4
CARHR090680 Cardamine hirsuta HOM05D002580 ORTHO05D002811 5.9e-10 68.2 107 31.8
BolC5t33830H Brassica oleracea HOM05D002580 ORTHO05D002811 1.0e-09 67.4 106 32.1
Thhalv10020655m.g Eutrema salsugineum HOM05D002580 ORTHO05D002811 1.0e-09 67.4 106 33.0
A05p33790 Brassica napus HOM05D002580 ORTHO05D002811 1.3e-09 67.0 106 32.1
BraA05t22201Z Brassica rapa HOM05D002580 ORTHO05D002910 1.3e-09 67.0 106 32.1
Ciclev10027462m.g Citrus clementina HOM05D002580 ORTHO05D002811 1.3e-09 67.0 79 36.7
BcaC05g28950 Brassica carinata HOM05D002580 ORTHO05D002811 2.2e-09 66.2 106 31.1
C05p50800 Brassica napus HOM05D002580 ORTHO05D002910 2.2e-09 66.2 106 31.1
ECA234G2614 Erigeron canadensis HOM05D002580 ORTHO05D002811 2.2e-09 66.2 113 30.1
SalBow5G1493 Salvia bowleyana HOM05D002580 ORTHO05D002811 2.9e-09 65.9 117 30.8
Sp3g13880 Schrenkiella parvula HOM05D002580 ORTHO05D002811 2.9e-09 65.9 103 30.1
EL10Ac9g21962 Beta vulgaris HOM05D002580 ORTHO05D002811 1.5e-08 63.5 99 29.3
PGR031G3020 Punica granatum HOM05D002580 ORTHO05D002811 1.5e-08 63.5 107 33.6
Carub.0003s1534 Capsella rubella HOM05D002580 ORTHO05D002811 1.9e-08 63.2 104 30.8
Aqoxy7G01990 Aquilegia oxysepala HOM05D002580 ORTHO05D002811 2.5e-08 62.8 90 37.8
BcaB04g19777 Brassica carinata HOM05D002580 ORTHO05D002811 2.5e-08 62.8 109 33.0
arahy.Tifrunner.gnm1.ann1.5I1UYP Arachis hypogaea HOM05D002580 ORTHO05D002811 2.1e-07 59.7 78 34.6
AUR62031278 Chenopodium quinoa HOM05D002580 ORTHO05D002811 2.1e-07 59.7 63 39.7
arahy.Tifrunner.gnm1.ann1.TCI6JY Arachis hypogaea HOM05D002580 ORTHO05D002811 2.7e-07 59.3 76 34.2
AUR62007144 Chenopodium quinoa HOM05D002580 ORTHO05D002811 8.0e-07 57.8 93 31.2
EL10Ac5g12299 Beta vulgaris HOM05D002580 ORTHO05D002811 1.4e-06 57.0 64 43.8
Gohir.D01G142000 Gossypium hirsutum HOM05D002580 ORTHO05D002811 1.4e-06 57.0 51 39.2
VMungo1309G0355 Vigna mungo HOM05D002580 ORTHO05D002811 2.3e-06 56.2 62 43.5
Gohir.D02G120800 Gossypium hirsutum HOM05D002580 ORTHO05D002811 3.0e-06 55.8 63 36.5
BcaB06g29599 Brassica carinata HOM05D002580 ORTHO05D002811 5.2e-06 55.1 92 31.5


User provided reference genes

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