Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0044981 Helianthus annuus HOM05D003769 ORTHO05D004521 6.7e-99 364.0 182 100.0
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 6.8e-51 204.5 104 94.2
HanXRQChr10g0292041 Helianthus annuus HOM05D003769 ORTHO05D004521 2.1e-44 183.0 117 81.2
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 5.8e-42 174.9 108 79.6
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 5.8e-42 174.9 109 78.9
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 4.7e-36 155.2 110 70.9
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 6.2e-36 154.8 110 73.6
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 6.2e-36 154.8 110 70.0
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 1.1e-35 154.1 110 72.7
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 1.4e-35 153.7 110 73.6
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 2.3e-35 152.9 110 70.9
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 4.0e-35 152.1 110 70.0
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 5.2e-35 151.8 110 69.1
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 1.5e-34 150.2 110 73.6
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 2.0e-34 149.8 108 72.2
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 2.0e-34 149.8 110 70.9
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 2.0e-34 149.8 110 71.8
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 3.4e-34 149.1 110 69.1
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 3.4e-34 149.1 110 66.4
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 3.4e-34 149.1 110 70.9
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 4.4e-34 148.7 110 70.0
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 4.4e-34 148.7 107 72.9
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 4.4e-34 148.7 110 70.9
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 5.8e-34 148.3 110 69.1
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 5.8e-34 148.3 110 70.0
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 5.8e-34 148.3 110 66.4
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 5.8e-34 148.3 110 70.9
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 7.6e-34 147.9 110 70.9
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 9.9e-34 147.5 107 72.0
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 9.9e-34 147.5 109 68.8
Psat7g012720 Pisum sativum HOM05D003769 ORTHO05D004521 9.9e-34 147.5 110 68.2
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 9.9e-34 147.5 109 67.9
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 1.3e-33 147.1 108 70.4
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 1.3e-33 147.1 110 70.9
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 1.3e-33 147.1 110 70.0
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 1.7e-33 146.7 110 69.1
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 1.7e-33 146.7 108 71.3
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 2.2e-33 146.4 110 67.3
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 2.2e-33 146.4 110 70.0
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 2.2e-33 146.4 108 71.3
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 2.9e-33 146.0 107 72.0
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 2.9e-33 146.0 110 70.9
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 3.8e-33 145.6 110 66.4
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 4.9e-33 145.2 110 68.2
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 6.4e-33 144.8 108 69.4
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 6.4e-33 144.8 110 68.2
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 6.4e-33 144.8 110 67.3
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 6.4e-33 144.8 110 66.4
QL10p023951 Quercus lobata HOM05D003769 ORTHO05D004521 6.4e-33 144.8 110 67.3
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 8.4e-33 144.4 110 68.2
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.1e-32 144.1 110 69.1
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 1.1e-32 144.1 110 68.2
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.1e-32 144.1 109 67.9
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 1.4e-32 143.7 109 68.8
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 1.4e-32 143.7 110 66.4
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 1.9e-32 143.3 110 66.4
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.9e-32 143.3 110 69.1
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 1.9e-32 143.3 110 66.4
Haze_18652 Corylus avellana HOM05D003769 ORTHO05D004521 2.4e-32 142.9 110 69.1
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 2.4e-32 142.9 109 69.7
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 3.2e-32 142.5 108 69.4
Cpa.g.sc13.14 Carica papaya HOM05D003769 ORTHO05D004521 3.2e-32 142.5 109 70.6
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 3.2e-32 142.5 110 67.3
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 4.1e-32 142.1 109 67.9
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 4.1e-32 142.1 110 69.1
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 4.1e-32 142.1 110 67.3
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 5.4e-32 141.7 108 68.5
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 5.4e-32 141.7 108 68.5
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 7.1e-32 141.4 110 67.3
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 9.2e-32 141.0 110 65.5
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 1.2e-31 140.6 112 65.2
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 1.2e-31 140.6 110 67.3
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 1.6e-31 140.2 108 68.5
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 1.6e-31 140.2 108 68.5
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 1.6e-31 140.2 108 68.5
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 1.6e-31 140.2 108 68.5
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 1.6e-31 140.2 108 68.5
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 1.6e-31 140.2 109 67.9
FvH4_5g12360 Fragaria vesca HOM05D003769 ORTHO05D004521 4.6e-31 138.7 109 66.1
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 4.6e-31 138.7 109 66.1
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 4.6e-31 138.7 109 66.1
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 4.6e-31 138.7 110 63.6
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 4.6e-31 138.7 110 63.6
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 1.0e-30 137.5 109 67.0
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 1.3e-30 137.1 110 63.6
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 1.3e-30 137.1 109 65.1
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.3e-30 137.1 109 65.1
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.3e-30 137.1 109 65.1
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 3.9e-30 135.6 109 65.1
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 3.9e-30 135.6 110 66.4
COL.COLO4_16279 Corchorus olitorius HOM05D003769 ORTHO05D004521 5.1e-30 135.2 110 66.4
unitig_8.g3058 Utricularia gibba HOM05D003769 ORTHO05D004521 6.6e-30 134.8 93 74.2
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 1.1e-29 134.0 110 62.7
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 1.5e-29 133.7 110 62.7
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 2.5e-29 132.9 110 60.9
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 7.3e-29 131.3 110 62.7
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.6e-28 130.2 110 55.5
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 1.6e-28 130.2 149 51.7
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 4.7e-28 128.6 110 55.5
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 1.8e-27 126.7 108 62.0
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 3.1e-27 125.9 120 58.3
Nitab4.5_0004412g0040 Nicotiana tabacum HOM05D003769 ORTHO05D004521 8.9e-27 124.4 151 50.3
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.6e-26 122.9 110 55.5
AUR62025889 Chenopodium quinoa HOM05D003769 ORTHO05D004521 3.4e-26 122.5 110 55.5
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 3.4e-26 122.5 110 56.4
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 3.4e-26 122.5 100 65.0
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 3.2e-24 115.9 143 50.3
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 3.2e-24 115.9 103 50.5
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 7.1e-24 114.8 110 52.7
SHI30400 Sapria himalayana HOM05D003769 ORTHO05D004521 3.9e-22 109.0 186 38.2
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 9.6e-21 104.4 89 62.9
AagrBONN_evm.TU.Sc2ySwM_368.2777 Anthoceros agrestis HOM05D003769 ORTHO05D004521 3.1e-19 99.4 124 48.4
vmacro04397 Vaccinium macrocarpon HOM05D003769 ORTHO05D004521 4.3e-13 79.0 72 59.7
MBI04_g48188_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 1.3e-12 77.4 39 89.7
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.8e-11 73.6 72 54.2
AUR62025881 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.8e-11 73.6 72 55.6
arahy.Tifrunner.gnm1.ann1.DGVF5A Arachis hypogaea HOM05D003769 ORTHO05D004521 3.8e-09 65.9 71 49.3
arahy.Tifrunner.gnm1.ann1.KRT5WL Arachis hypogaea HOM05D003769 ORTHO05D004521 6.0e-07 58.5 80 42.5


User provided reference genes

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