Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 0.0e+00 1125.9 681 100.0
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.0e-232 810.4 516 82.4
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.9e-232 808.9 645 75.8
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 6.2e-214 748.0 695 70.9
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.6e-196 689.5 512 72.3
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.6e-193 680.2 728 62.4
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 3.4e-188 662.5 724 60.8
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.4e-186 657.1 699 63.2
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.0e-184 651.0 527 66.6
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.8e-184 650.2 688 64.5
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 5.1e-184 648.7 527 66.6
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.5e-183 647.1 522 68.0
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 2.6e-180 636.3 752 60.4
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.1e-177 626.7 513 64.7
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 3.9e-176 622.5 506 66.0
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 5.1e-176 622.1 533 60.4
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 5.1e-176 622.1 509 64.4
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 5.1e-176 622.1 540 62.6
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 8.7e-176 621.3 506 65.8
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.3e-175 619.0 559 63.1
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 7.4e-175 618.2 529 64.7
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 7.4e-175 618.2 514 66.0
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.3e-174 617.5 497 64.8
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.7e-174 615.9 725 58.1
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 6.3e-174 615.1 519 65.1
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.1e-173 614.4 515 64.9
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 2.4e-173 613.2 532 64.5
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.4e-173 613.2 527 65.7
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 3.1e-173 612.8 532 64.3
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.1e-173 612.8 488 66.8
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.6e-172 609.8 514 65.4
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 5.9e-172 608.6 548 60.2
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 7.6e-172 608.2 532 61.1
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.0e-171 607.8 514 65.4
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.3e-171 607.4 734 56.1
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.7e-171 607.1 619 67.4
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.8e-171 605.9 519 64.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 6.5e-171 605.1 511 65.6
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 5.5e-170 602.1 519 65.5
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 7.2e-170 601.7 543 61.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 7.2e-170 601.7 518 62.9
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 9.3e-170 601.3 522 63.6
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 3.5e-169 599.4 722 57.5
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 3.9e-168 595.9 722 57.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.1e-167 594.3 466 65.7
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.9e-167 593.6 716 56.3
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.3e-166 590.9 534 62.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.7e-166 589.3 535 62.4
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.7e-166 589.3 535 62.2
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 6.3e-166 588.6 534 62.4
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.8e-165 587.0 460 65.9
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 2.4e-165 586.6 533 61.5
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.1e-165 586.3 534 62.0
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.1e-165 585.9 711 57.2
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.5e-164 583.9 708 57.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.5e-164 583.9 710 57.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.5e-164 583.9 524 63.2
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.3e-163 580.9 541 61.7
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.2e-163 580.1 642 59.7
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 5.0e-163 578.9 710 56.1
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 8.5e-163 578.2 699 57.7
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.9e-162 577.0 519 62.2
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.9e-162 577.0 464 66.4
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 2.5e-162 576.6 516 61.8
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 3.6e-161 572.8 521 62.6
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 7.9e-161 571.6 490 62.9
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.0e-160 571.2 594 60.6
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.4e-160 570.9 531 60.3
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.8e-160 570.5 458 64.4
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 5.1e-160 568.9 536 60.3
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 6.7e-160 568.5 521 57.8
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 8.8e-160 568.2 525 61.0
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-159 567.8 519 60.1
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.7e-158 563.9 488 63.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 3.7e-158 562.8 506 63.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 3.7e-158 562.8 430 66.5
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 6.3e-158 562.0 548 58.9
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.1e-157 559.3 407 68.3
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.5e-156 557.4 503 60.2
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.0e-155 554.7 537 58.5
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.7e-155 553.9 520 60.6
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.1e-154 551.2 535 59.1
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 6.1e-153 545.4 532 59.4
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.3e-151 539.7 456 61.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 7.4e-151 538.5 500 59.6
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 4.1e-149 532.7 476 62.6
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.2e-147 526.9 508 59.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 5.0e-147 525.8 585 67.5
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 5.2e-144 515.8 698 51.7
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.5e-143 514.2 534 56.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.0e-143 513.8 388 64.9
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.3e-143 513.1 400 65.8
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.7e-142 510.8 512 58.8
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 4.1e-141 506.1 520 55.8
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 5.3e-141 505.8 495 55.8
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.0e-139 501.5 420 61.2
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 7.2e-138 495.4 528 51.5
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 7.2e-138 495.4 521 55.3
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.0e-136 491.5 396 65.2
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 2.3e-136 490.3 598 53.5
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.2e-135 488.0 521 56.2
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 5.7e-135 485.7 418 59.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.8e-134 483.4 379 62.8
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 8.3e-134 481.9 411 59.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.1e-129 467.2 439 55.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 6.1e-129 465.7 459 54.2
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.6e-127 460.3 454 54.0
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.4e-125 454.5 420 57.4
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.4e-125 452.6 379 62.0
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.0e-123 448.4 519 52.8
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 7.5e-111 405.6 551 59.2
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.1e-109 401.7 447 50.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.0e-107 392.9 358 59.5
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.1e-104 385.2 328 59.8
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.5e-100 370.2 506 43.1
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.7e-99 367.9 415 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 2.3e-99 367.5 424 49.5
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 7.3e-98 362.5 363 52.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 6.8e-96 355.9 355 54.6
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.8e-89 334.0 362 51.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 7.6e-87 325.9 469 46.9
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.7e-78 298.1 326 57.7
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.1e-77 295.4 217 68.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.5e-66 258.5 366 41.3
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 4.3e-66 256.9 216 61.1
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.6e-65 255.0 503 37.4
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 4.2e-61 240.4 275 56.7
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.6e-60 238.4 350 43.4
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 3.7e-57 227.3 187 62.6
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 3.3e-50 204.1 199 53.3
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.4e-48 198.0 134 68.7
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.5e-45 186.8 518 29.0
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.1e-44 184.9 132 65.2
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 2.3e-35 154.8 94 79.8
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 2.8e-33 147.9 183 55.2
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 4.0e-27 127.5 93 64.5
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 8.8e-27 126.3 93 64.5
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 2.2e-25 121.7 113 61.1
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 2.7e-23 114.8 232 34.1
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.5e-22 109.8 147 59.2
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 1.2e-20 105.9 116 54.3
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.8e-19 102.1 131 60.3
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.7e-18 97.1 126 44.4
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.4e-16 92.4 88 54.5
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.2e-13 80.9 106 48.1
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.6e-12 79.0 166 36.7
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.2e-11 73.9 125 40.0
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 3.4e-10 71.2 58 69.0
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 7.5e-10 70.1 116 41.4
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 2.8e-09 68.2 44 72.7
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.2e-07 62.8 95 36.8


User provided reference genes

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