Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032161 Helianthus annuus HOM05D003226 ORTHO05D005723 6.4e-60 233.8 111 100.0
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 7.6e-13 77.4 43 95.3
ECA246G4217 Erigeron canadensis HOM05D003226 ORTHO05D005723 1.8e-09 66.2 43 79.1
MD02G1198100 Malus domestica HOM05D003226 ORTHO05D005723 1.1e-08 63.5 43 76.7
Lsat_1_v5_gn_3_101601 Lactuca sativa HOM05D003226 ORTHO05D005723 1.9e-08 62.8 44 79.5
RcHm_v2.0_Chr6g0300801 Rosa chinensis HOM05D003226 ORTHO05D005723 1.9e-08 62.8 43 76.7
CSS0044326 Camellia sinensis var. sinensis HOM05D003226 ORTHO05D005723 3.3e-08 62.0 43 72.1
Ciclev10010934m.g Citrus clementina HOM05D003226 ORTHO05D005723 3.3e-08 62.0 43 72.1
Prupe.3G267300 Prunus persica HOM05D003226 ORTHO05D005723 3.3e-08 62.0 43 74.4
Thecc.04G082300 Theobroma cacao HOM05D003226 ORTHO05D005723 4.3e-08 61.6 43 72.1
FvH4_2g39941 Fragaria vesca HOM05D003226 ORTHO05D005723 5.7e-08 61.2 43 74.4
FAN15G3277 Fragaria x ananassa HOM05D003226 ORTHO05D005723 5.7e-08 61.2 43 74.4
FAN20G3149 Fragaria x ananassa HOM05D003226 ORTHO05D005723 5.7e-08 61.2 43 74.4
FAN27G0501 Fragaria x ananassa HOM05D003226 ORTHO05D005723 5.7e-08 61.2 43 74.4
Duzib187G0629 Durio zibethinus HOM05D003226 ORTHO05D005723 7.4e-08 60.8 43 72.1
COL.COLO4_33309 Corchorus olitorius HOM05D003226 ORTHO05D005723 9.7e-08 60.5 58 60.3
Cpa.g.sc140.54 Carica papaya HOM05D003226 ORTHO05D005723 1.3e-07 60.1 64 53.1
Actinidia06098 Actinidia chinensis HOM05D003226 ORTHO05D005723 2.8e-07 58.9 43 69.8
PGR004G1048 Punica granatum HOM05D003226 ORTHO05D005723 2.8e-07 58.9 64 53.1
BolC7t44308H Brassica oleracea HOM05D003226 ORTHO05D005723 3.7e-07 58.5 64 53.1
Gohir.A09G016100 Gossypium hirsutum HOM05D003226 ORTHO05D005723 3.7e-07 58.5 43 67.4
Gohir.D09G014800 Gossypium hirsutum HOM05D003226 ORTHO05D005723 3.7e-07 58.5 43 67.4
Gorai.006G016800 Gossypium raimondii HOM05D003226 ORTHO05D005723 3.7e-07 58.5 43 67.4
Glyma.13G062800 Glycine max HOM05D003226 ORTHO05D005723 4.8e-07 58.2 53 60.4
Lj7C393G0 Lonicera japonica HOM05D003226 ORTHO05D005723 4.8e-07 58.2 43 69.8
Phvul.004G029000 Phaseolus vulgaris HOM05D003226 ORTHO05D005723 4.8e-07 58.2 53 60.4
QL11p027129 Quercus lobata HOM05D003226 ORTHO05D005723 4.8e-07 58.2 41 70.7
vmacro02215 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 4.8e-07 58.2 49 59.2
AL8G21600 Arabidopsis lyrata HOM05D003226 ORTHO05D005723 6.3e-07 57.8 64 51.6
AT5G48600 Arabidopsis thaliana HOM05D003226 ORTHO05D005723 6.3e-07 57.8 64 51.6
CARHR037400 Cardamine hirsuta HOM05D003226 ORTHO05D005723 6.3e-07 57.8 64 51.6
Hund08915 Selenicereus undatus HOM05D003226 ORTHO05D005723 6.3e-07 57.8 43 67.4
Ah.10g031620 Amaranthus hybridus HOM05D003226 ORTHO05D005723 8.2e-07 57.4 43 67.4
A06p40240 Brassica napus HOM05D003226 ORTHO05D005723 8.2e-07 57.4 64 51.6
C07p37860 Brassica napus HOM05D003226 ORTHO05D005723 8.2e-07 57.4 64 51.6
BraA06t26939Z Brassica rapa HOM05D003226 ORTHO05D005723 8.2e-07 57.4 64 51.6
Thhalv10003529m.g Eutrema salsugineum HOM05D003226 ORTHO05D005723 8.2e-07 57.4 64 51.6
Carub.0005s0749 Capsella rubella HOM05D003226 ORTHO05D005723 1.1e-06 57.0 64 51.6
Aa31LG2G4270 Aethionema arabicum HOM05D003226 ORTHO05D005723 1.4e-06 56.6 49 57.1
Cc07_g03380 Coffea canephora HOM05D003226 ORTHO05D005723 1.4e-06 56.6 49 61.2
Oeu062107.2 Olea europaea HOM05D003226 ORTHO05D005723 1.4e-06 56.6 43 67.4
QL11p027662 Quercus lobata HOM05D003226 ORTHO05D000594 1.4e-06 56.6 49 59.2
arahy.Tifrunner.gnm1.ann1.R713I2 Arachis hypogaea HOM05D003226 ORTHO05D005723 1.8e-06 56.2 43 67.4
arahy.Tifrunner.gnm1.ann1.WKF5J8 Arachis hypogaea HOM05D003226 ORTHO05D005723 1.8e-06 56.2 43 67.4
EL10Ac2g02987 Beta vulgaris HOM05D003226 ORTHO05D005723 1.8e-06 56.2 43 65.1
BcaC06g33656 Brassica carinata HOM05D003226 ORTHO05D005723 1.8e-06 56.2 64 50.0
QL02p063973 Quercus lobata HOM05D003226 ORTHO05D005723 1.8e-06 56.2 58 56.9
Sp2g17560 Schrenkiella parvula HOM05D003226 ORTHO05D005723 1.8e-06 56.2 64 50.0
THA.LOC104805468 Tarenaya hassleriana HOM05D003226 ORTHO05D005723 1.8e-06 56.2 43 62.8
TAR375G0513 Trochodendron aralioides HOM05D003226 ORTHO05D005723 1.8e-06 56.2 43 65.1
Manes.02G046500 Manihot esculenta HOM05D003226 ORTHO05D005723 2.4e-06 55.8 49 59.2
GSVIVG01011403001 Vitis vinifera HOM05D003226 ORTHO05D005723 2.4e-06 55.8 43 65.1
GSVIVG01011408001 Vitis vinifera HOM05D003226 ORTHO05D005723 2.4e-06 55.8 43 65.1
CiPaw.03G026700 Carya illinoinensis HOM05D003226 ORTHO05D005723 3.1e-06 55.5 43 67.4
Glyma.19G022800 Glycine max HOM05D003226 ORTHO05D005723 3.1e-06 55.5 43 67.4
Lalb_Chr21g0318701 Lupinus albus HOM05D003226 ORTHO05D005723 3.1e-06 55.5 43 65.1
Medtr7g091430 Medicago truncatula HOM05D003226 ORTHO05D005723 3.1e-06 55.5 65 50.8
Os05g0497150 Oryza sativa ssp. japonica HOM05D003226 ORTHO05D005723 3.1e-06 55.5 72 43.1
Rhsim10G0039000 Rhododendron simsii HOM05D003226 ORTHO05D005723 3.1e-06 55.5 43 62.8
DCAR_025375 Daucus carota HOM05D003226 ORTHO05D005723 4.1e-06 55.1 43 65.1
Oeu039527.1 Olea europaea HOM05D003226 ORTHO05D005723 4.1e-06 55.1 58 55.2
Peaxi162Scf00011g02911 Petunia axillaris HOM05D003226 ORTHO05D005723 4.1e-06 55.1 43 65.1
Peaxi162Scf00129g00132 Petunia axillaris HOM05D003226 ORTHO05D005723 4.1e-06 55.1 67 49.3
Psat4g106040 Pisum sativum HOM05D003226 ORTHO05D005723 4.1e-06 55.1 58 55.2
PGSC0003DMG400001326 Solanum tuberosum HOM05D003226 ORTHO05D005723 4.1e-06 55.1 43 65.1
CANSAT64G2675 Cannabis sativa HOM05D003226 ORTHO05D005723 5.3e-06 54.7 43 65.1
Nn4g25634 Nelumbo nucifera HOM05D003226 ORTHO05D005723 5.3e-06 54.7 74 43.2
vmacro05694 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 5.3e-06 54.7 43 62.8
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 6.9e-06 54.3 43 65.1
CAN.G206.153 Capsicum annuum HOM05D003226 ORTHO05D005723 6.9e-06 54.3 43 65.1
Dinv05916 Davidia involucrata HOM05D003226 ORTHO05D005723 6.9e-06 54.3 43 65.1
Dinv05919 Davidia involucrata HOM05D003226 ORTHO05D005723 6.9e-06 54.3 43 65.1
TWI34G0415 Tripterygium wilfordii HOM05D003226 ORTHO05D005723 6.9e-06 54.3 43 62.8
Dinv33760 Davidia involucrata HOM05D003226 ORTHO05D005723 9.1e-06 53.9 43 65.1
Sc14g0005870 Simmondsia chinensis HOM05D003226 ORTHO05D005723 9.1e-06 53.9 64 48.4


User provided reference genes

Program Settings