Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 0.0e+00 1713.4 846 100.0
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 0.0e+00 1139.0 793 72.1
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 2.2e-301 1038.9 783 67.7
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 7.1e-244 847.8 861 54.2
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.8e-218 761.1 852 49.6
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.0e-217 760.0 826 50.7
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.7e-216 756.9 852 49.5
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 6.3e-216 755.0 849 49.4
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.1e-215 754.2 880 48.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 8.8e-210 734.6 872 47.6
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 2.4e-207 726.5 874 46.6
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.0e-206 723.4 836 47.1
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.6e-206 723.0 843 48.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 4.5e-206 722.2 870 46.7
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.3e-205 720.7 873 46.3
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.9e-205 719.5 859 45.1
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.9e-205 719.5 875 47.0
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.5e-204 717.2 872 46.1
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.5e-204 716.5 857 45.3
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.5e-204 716.5 843 47.7
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 5.5e-204 715.3 839 47.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 7.2e-204 714.9 843 47.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.2e-203 714.1 869 45.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.7e-203 712.2 861 46.9
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.3e-202 709.9 874 45.7
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.0e-201 706.8 883 43.8
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 3.3e-201 706.1 869 45.6
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 7.5e-201 704.9 869 45.6
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 7.5e-201 704.9 858 46.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 9.7e-201 704.5 857 45.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 4.8e-200 702.2 862 45.6
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.4e-199 699.9 857 45.5
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.0e-199 698.4 889 45.3
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.1e-199 698.0 875 45.1
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.6e-198 697.2 873 44.2
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.6e-198 697.2 881 45.6
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.5e-198 696.0 874 45.3
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 1.3e-197 694.1 858 46.6
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.7e-197 693.7 889 45.1
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.9e-197 693.0 868 44.0
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 4.7e-195 685.6 864 45.4
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 6.1e-195 685.3 868 44.7
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 6.8e-194 681.8 836 46.1
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.6e-193 679.9 822 47.7
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.7e-192 677.2 878 44.4
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.2e-192 676.8 816 46.0
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 7.7e-190 668.3 896 44.5
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.3e-189 667.5 825 46.3
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.7e-189 667.2 831 45.0
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.0e-189 665.6 922 43.2
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.5e-188 664.1 832 45.9
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.5e-188 663.3 859 46.2
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.6e-187 660.6 889 43.0
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 6.1e-187 658.7 819 45.7
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 8.0e-187 658.3 806 46.7
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 4.0e-186 656.0 863 44.6
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 4.0e-186 656.0 863 44.6
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 6.8e-186 655.2 817 47.1
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 6.8e-186 655.2 834 44.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 5.7e-185 652.1 871 43.9
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 5.7e-185 652.1 871 43.9
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.7e-184 650.6 855 44.3
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 6.3e-184 648.7 814 46.2
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 6.3e-184 648.7 814 46.2
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 8.3e-184 648.3 862 44.3
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.1e-183 646.0 861 43.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.2e-182 644.4 896 42.3
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.0e-182 643.7 858 43.5
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 2.7e-182 643.3 893 42.1
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 3.5e-182 642.9 818 45.7
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-181 640.6 844 43.6
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 5.0e-181 639.0 855 43.5
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 6.6e-181 638.6 869 43.4
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 8.6e-181 638.3 944 40.7
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.1e-180 637.9 844 44.8
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.1e-180 637.9 844 44.8
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.9e-180 637.1 816 45.5
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.9e-180 637.1 858 43.4
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 4.3e-180 636.0 871 42.7
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 6.1e-179 632.1 896 42.0
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 9.8e-177 624.8 863 43.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.6e-174 617.5 843 42.2
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 7.8e-174 615.1 853 40.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 5.6e-172 609.0 848 42.9
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.6e-171 607.4 862 41.9
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.0e-169 600.5 912 40.1
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 6.4e-168 595.5 860 41.3
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.0e-167 592.0 827 42.8
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 2.0e-166 590.5 844 40.5
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.3e-165 587.8 946 39.3
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 4.4e-161 572.8 836 40.8
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 4.9e-160 569.3 901 40.5
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 4.9e-160 569.3 816 42.6
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.4e-160 568.9 794 42.9
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 3.5e-158 563.1 728 44.4
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 6.0e-158 562.4 811 41.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.3e-156 556.6 721 44.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 5.6e-156 555.8 785 40.4
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-155 553.5 743 43.3
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.1e-154 550.1 720 44.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.4e-151 541.2 834 40.0
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 4.3e-148 529.6 608 48.4
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 3.8e-144 516.5 856 38.1
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.0e-138 496.5 532 52.3
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 9.9e-137 491.9 669 43.9
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.4e-135 488.0 578 46.7
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.4e-135 488.0 653 41.5
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.4e-128 462.6 606 44.1
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 5.5e-127 459.5 675 41.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.8e-121 439.5 614 43.5
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.3e-115 419.5 562 41.8
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.5e-113 414.8 777 36.2
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.9e-112 410.6 635 40.9
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 8.2e-107 392.5 852 33.6
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 5.0e-104 383.3 511 45.0
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 3.6e-94 350.5 377 48.8
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 6.5e-88 329.7 606 35.0
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 8.0e-86 322.8 535 37.8
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.8e-83 314.3 459 41.4
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.1e-82 312.4 544 38.2
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.7e-81 306.2 626 34.5
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.5e-79 302.0 356 46.9
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 7.2e-79 299.7 224 71.0
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.2e-75 288.1 517 36.8
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 3.1e-74 284.3 956 28.1
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 4.0e-69 267.3 618 31.6
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.1e-66 259.2 702 29.1
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 6.6e-64 250.0 448 37.1
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.4e-61 242.3 191 65.4
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.4e-61 242.3 287 47.4
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.3e-61 241.5 217 59.4
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.2e-60 239.2 516 32.8
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 3.6e-54 217.6 188 59.0
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 6.4e-51 206.8 286 41.3
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.4e-50 205.7 185 60.5
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.6e-48 196.8 214 48.1
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 6.6e-48 196.8 455 33.8
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.1e-46 191.8 176 59.7
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 1.2e-44 186.0 175 54.3
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 4.1e-42 177.6 158 53.8
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 3.5e-41 174.5 139 61.9
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 7.3e-39 166.8 321 35.8
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.2e-38 166.0 200 48.5
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-38 165.6 163 55.8
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 2.2e-35 155.2 163 54.6
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 5.4e-34 150.6 236 39.8
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 7.1e-34 150.2 117 58.1
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.3e-32 146.0 158 50.6
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.7e-32 145.6 152 53.3
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 2.3e-32 145.2 152 52.0
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 3.0e-32 144.8 115 58.3
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 8.7e-32 143.3 126 55.6
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.4e-29 136.0 148 53.4
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 4.0e-29 134.4 77 81.8
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 9.0e-29 133.3 396 27.5
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.6e-28 131.7 152 50.7
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.9e-28 129.8 101 63.4
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.8e-27 127.9 97 63.9
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 4.2e-26 124.4 682 22.3
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 5.4e-26 124.0 246 31.3
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.3e-24 119.4 93 62.4
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 7.3e-23 113.6 301 27.6
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 7.3e-23 113.6 91 52.7
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 9.6e-23 113.2 250 32.4
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 5.8e-20 104.0 192 33.3
HanXRQChr17g0537991 Helianthus annuus HOM05D003758 ORTHO05D004344 3.9e-16 91.3 73 68.5
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-14 85.5 71 57.7
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.1e-14 85.5 101 47.5
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.8e-14 84.3 82 56.1
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 4.8e-14 84.3 118 45.8
Lsat_1_v5_gn_8_112581 Lactuca sativa HOM05D003758 ORTHO05D004344 1.1e-13 83.2 78 55.1
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.3e-11 76.3 58 63.8
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.9e-10 72.4 116 34.5
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 4.2e-10 71.2 87 52.9
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 7.1e-10 70.5 64 59.4
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.6e-09 69.3 140 31.4
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.8e-08 65.9 56 53.6
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.3e-08 65.5 52 61.5


User provided reference genes

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