Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0012761 Helianthus annuus HOM05D002125 ORTHO05D002105 9.4e-32 140.2 109 100.0
HanXRQChr05g0130061 Helianthus annuus HOM05D002125 ORTHO05D002105 9.4e-32 140.2 109 100.0
HanXRQChr16g0511061 Helianthus annuus HOM05D002125 ORTHO05D002105 3.4e-13 78.6 37 100.0
Lsat_1_v5_gn_8_103981 Lactuca sativa HOM05D002125 ORTHO05D002105 4.6e-10 68.2 37 86.5
Rhsim05G0226700 Rhododendron simsii HOM05D002125 ORTHO05D002105 1.5e-08 63.2 37 70.3
ECA236G3892 Erigeron canadensis HOM05D002125 ORTHO05D002105 5.6e-08 61.2 37 75.7
Dinv09681 Davidia involucrata HOM05D002125 ORTHO05D002105 1.2e-07 60.1 37 70.3
TAR623G1068 Trochodendron aralioides HOM05D002125 ORTHO05D002105 1.2e-07 60.1 37 70.3
MSTRG.5534 Avicennia marina HOM05D002125 ORTHO05D002105 2.1e-07 59.3 37 67.6
CSS0007269 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 2.1e-07 59.3 37 67.6
Dinv12184 Davidia involucrata HOM05D002125 ORTHO05D002105 2.1e-07 59.3 37 64.9
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 2.8e-07 58.9 37 64.9
Dinv35421 Davidia involucrata HOM05D002125 ORTHO05D002105 4.7e-07 58.2 37 62.2
TAR369G0073 Trochodendron aralioides HOM05D002125 ORTHO05D002105 4.7e-07 58.2 37 64.9
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Potri.019G123400 Populus trichocarpa HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra15G0043400 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra15G0044900 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra15G0045600 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra15G0048000 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra15G0051600 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra15G0059800 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra15G0060500 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra19G0122000 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Sabra19G0132300 Salix brachista HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 64.9
Hund19853 Selenicereus undatus HOM05D002125 ORTHO05D002105 6.2e-07 57.8 37 67.6
CSS0015901 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 8.0e-07 57.4 37 62.2
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 8.0e-07 57.4 37 62.2
Lj3A945T19 Lonicera japonica HOM05D002125 ORTHO05D002105 8.0e-07 57.4 37 64.9
Peaxi162Scf00264g00860 Petunia axillaris HOM05D002125 ORTHO05D002105 8.0e-07 57.4 37 62.2
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 1.1e-06 57.0 37 62.2
Migut.J00087 Erythranthe guttata HOM05D002125 ORTHO05D002105 1.1e-06 57.0 37 62.2
Manes.18G145100 Manihot esculenta HOM05D002125 ORTHO05D002105 1.1e-06 57.0 37 62.2
CSS0021162 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 1.4e-06 56.6 37 59.5
Duzib106G1864 Durio zibethinus HOM05D002125 ORTHO05D002105 1.4e-06 56.6 37 62.2
Oeu023749.1 Olea europaea HOM05D002125 ORTHO05D002105 1.8e-06 56.2 37 59.5
Sabra16G0130000 Salix brachista HOM05D002125 ORTHO05D002105 1.8e-06 56.2 37 64.9
vmacro20333 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 1.8e-06 56.2 37 64.9
Potri.006G105400 Populus trichocarpa HOM05D002125 ORTHO05D002105 2.3e-06 55.8 37 64.9
Solyc10g076290.2 Solanum lycopersicum HOM05D002125 ORTHO05D002105 2.3e-06 55.8 37 59.5
Sopen10g027910 Solanum pennellii HOM05D002125 ORTHO05D002105 2.3e-06 55.8 37 59.5
Thecc.05G005500 Theobroma cacao HOM05D002125 ORTHO05D002105 2.3e-06 55.8 37 59.5
GSVIVG01024623001 Vitis vinifera HOM05D002125 ORTHO05D002105 2.3e-06 55.8 35 68.6
Actinidia20774 Actinidia chinensis HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
Cc00_g13900 Coffea canephora HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
FvH4_6g10500 Fragaria vesca HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
FAN02G2848 Fragaria x ananassa HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
FAN05G3110 Fragaria x ananassa HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
FAN05G3214 Fragaria x ananassa HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
FAN14G4647 Fragaria x ananassa HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
Potri.016G128400 Populus trichocarpa HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 64.9
PGSC0003DMG400011864 Solanum tuberosum HOM05D002125 ORTHO05D002105 3.1e-06 55.5 37 59.5
Duzib093G1543 Durio zibethinus HOM05D002125 ORTHO05D002105 4.0e-06 55.1 83 55.4
FvH4_3g39860 Fragaria vesca HOM05D002125 ORTHO05D002105 4.0e-06 55.1 37 62.2
FAN11G3761 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.0e-06 55.1 37 62.2
FAN16G2220 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.0e-06 55.1 37 62.2
FAN21G0056 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.0e-06 55.1 37 62.2
Actinidia32548 Actinidia chinensis HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 59.5
arahy.Tifrunner.gnm1.ann1.W9TR1A Arachis hypogaea HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 62.2
arahy.Tifrunner.gnm1.ann1.WL5YV9 Arachis hypogaea HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 62.2
MSTRG.17896 Avicennia marina HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 62.2
CANSAT35G0731 Cannabis sativa HOM05D002125 ORTHO05D002105 5.2e-06 54.7 35 62.9
FAN25G2295 Fragaria x ananassa HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 62.2
Lalb_Chr12g0207441 Lupinus albus HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 67.6
Nitab4.5_0000355g0180 Nicotiana tabacum HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 56.8
Nitab4.5_0003850g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 56.8
Oeu050024.1 Olea europaea HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 59.5
QL07p033676 Quercus lobata HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 59.5
SalBow4G2763 Salvia bowleyana HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 56.8
Hund03802 Selenicereus undatus HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 62.2
SGA_v2.0_scaffold85G26673 Striga asiatica HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 64.9
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 5.2e-06 54.7 37 59.5
Cpa.g.sc2.343 Carica papaya HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 59.5
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 62.2
AUR62006299 Chenopodium quinoa HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 59.5
AUR62026344 Chenopodium quinoa HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 59.5
FAN09G3322 Fragaria x ananassa HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 56.8
Gohir.D01G220201 Gossypium hirsutum HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 56.8
Gorai.002G266900 Gossypium raimondii HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 56.8
Sed0004912 Sechium edule HOM05D002125 ORTHO05D002105 6.8e-06 54.3 37 62.2
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 8.9e-06 53.9 37 59.5
MD04G1167900 Malus domestica HOM05D002125 ORTHO05D002105 8.9e-06 53.9 37 56.8
vmacro08918 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 8.9e-06 53.9 37 62.2
HPP92_015582 Vanilla planifolia HOM05D002125 ORTHO05D002105 8.9e-06 53.9 37 59.5


User provided reference genes

Program Settings