Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 8.6e-76 287.0 150 100.0
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 1.7e-63 246.1 150 86.7
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.4e-49 199.9 139 69.8
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 1.2e-48 196.8 132 74.2
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 4.4e-48 194.9 140 68.6
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 4.4e-48 194.9 150 70.7
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 5.8e-48 194.5 139 68.3
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-47 193.4 139 67.6
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 2.9e-47 192.2 141 66.7
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 4.9e-47 191.4 133 69.9
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-46 190.3 139 66.9
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-46 190.3 139 66.9
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.1e-46 190.3 139 66.9
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 1.9e-46 189.5 128 71.9
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 4.2e-46 188.3 139 66.2
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 9.3e-46 187.2 135 66.7
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 9.3e-46 187.2 139 66.2
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 1.2e-45 186.8 139 65.5
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 1.2e-45 186.8 129 69.8
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 1.6e-45 186.4 148 63.5
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 2.1e-45 186.0 139 65.5
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 3.5e-45 185.3 150 63.3
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 3.5e-45 185.3 124 73.4
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 3.5e-45 185.3 152 65.8
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 4.6e-45 184.9 139 66.2
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 6.0e-45 184.5 150 63.3
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 6.0e-45 184.5 132 66.7
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.3e-44 183.3 124 71.0
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.3e-44 183.3 127 70.1
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 1.7e-44 183.0 136 65.4
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 2.3e-44 182.6 123 69.1
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 2.3e-44 182.6 148 64.2
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 3.9e-44 181.8 150 60.0
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 5.1e-44 181.4 151 62.3
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 6.6e-44 181.0 128 69.5
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 6.6e-44 181.0 150 62.7
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 1.9e-43 179.5 151 60.9
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 1.9e-43 179.5 149 62.4
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.9e-43 179.5 151 61.6
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 2.5e-43 179.1 152 64.5
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 2.5e-43 179.1 127 67.7
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 2.5e-43 179.1 128 68.0
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 4.3e-43 178.3 122 71.3
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 5.6e-43 177.9 151 60.9
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 7.3e-43 177.6 127 66.1
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.6e-42 176.4 136 63.2
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 2.8e-42 175.6 139 63.3
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 3.6e-42 175.3 139 63.3
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 8.1e-42 174.1 123 69.1
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.8e-41 172.9 130 66.9
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 2.4e-41 172.6 153 59.5
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 3.1e-41 172.2 139 61.9
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 3.1e-41 172.2 149 59.7
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 4.0e-41 171.8 128 64.8
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 5.3e-41 171.4 154 57.8
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 5.3e-41 171.4 153 60.8
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 6.9e-41 171.0 154 55.8
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 6.9e-41 171.0 127 64.6
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 6.9e-41 171.0 123 67.5
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 6.9e-41 171.0 128 64.1
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.2e-40 170.2 128 63.3
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 2.0e-40 169.5 136 63.2
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 2.6e-40 169.1 153 62.1
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.6e-40 169.1 158 57.6
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.6e-40 169.1 158 57.6
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 3.4e-40 168.7 122 67.2
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 7.6e-40 167.5 122 66.4
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 8.4e-39 164.1 128 63.3
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 1.1e-38 163.7 122 66.4
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 1.9e-38 162.9 113 69.9
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 1.9e-38 162.9 128 62.5
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 1.9e-38 162.9 128 62.5
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 3.2e-38 162.2 120 62.5
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 4.2e-38 161.8 122 66.4
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 7.1e-38 161.0 150 56.7
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 1.2e-37 160.2 122 62.3
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.1e-37 159.5 104 74.0
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 4.6e-37 158.3 125 59.2
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 4.6e-37 158.3 132 60.6
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 6.0e-37 157.9 122 63.9
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 6.0e-37 157.9 128 60.2
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 6.0e-37 157.9 128 58.6
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 7.9e-37 157.5 122 63.9
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.0e-36 157.1 104 73.1
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 1.3e-36 156.8 125 63.2
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 3.9e-36 155.2 140 57.1
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 9.6e-35 150.6 196 49.5
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 1.3e-34 150.2 104 69.2
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 4.8e-34 148.3 100 71.0
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 6.2e-34 147.9 101 71.3
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 3.1e-33 145.6 127 59.1
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 9.0e-33 144.1 117 63.2
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 2.6e-32 142.5 121 61.2
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 7.6e-32 141.0 122 63.9
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.2e-31 139.4 169 46.7
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 8.4e-31 137.5 106 63.2
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 1.9e-30 136.3 106 61.3
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 3.2e-30 135.6 119 53.8
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 2.1e-29 132.9 120 59.2
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 4.6e-29 131.7 145 53.8
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 7.9e-29 131.0 120 52.5
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.3e-28 130.2 94 68.1
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 1.8e-28 129.8 123 51.2
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 1.8e-28 129.8 103 62.1
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.5e-27 125.9 99 61.6
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 4.3e-27 125.2 99 61.6
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.3e-26 123.6 99 60.6
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 6.2e-26 121.3 79 82.3
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 1.5e-24 116.7 94 60.6
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.3e-23 113.6 98 59.2
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 3.8e-23 112.1 123 48.0
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 3.9e-20 102.1 90 55.6
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 6.7e-20 101.3 102 48.0
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 3.3e-19 99.0 101 42.6
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.8e-18 95.9 124 44.4
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.4e-17 93.6 98 46.9
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 1.8e-17 93.2 74 60.8
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 1.2e-16 90.5 91 52.7
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.0e-16 89.7 71 60.6
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 1.9e-14 83.2 116 34.5
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 1.4e-12 77.0 57 63.2


User provided reference genes

Program Settings