Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 8.4e-148 526.9 256 100.0
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 3.8e-116 421.8 267 79.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.8e-116 421.8 259 80.7
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.4e-115 419.9 259 81.5
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 9.4e-115 417.2 260 81.9
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 2.7e-114 415.6 259 81.1
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 2.7e-114 415.6 259 81.1
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.0e-113 413.7 259 80.7
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.8e-113 412.9 267 78.3
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.8e-113 412.9 259 79.9
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 3.9e-113 411.8 259 80.7
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 6.7e-113 411.0 267 76.0
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 8.8e-113 410.6 267 76.4
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 7.4e-112 407.5 267 76.0
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 7.4e-112 407.5 267 76.4
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.3e-111 406.8 259 81.1
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.3e-111 406.8 260 80.0
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 1.7e-111 406.4 259 81.1
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.7e-111 406.4 260 78.8
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 2.8e-111 405.6 267 76.8
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.8e-111 405.6 258 77.9
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 4.8e-111 404.8 259 80.3
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 4.8e-111 404.8 267 76.4
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.8e-111 404.8 267 76.4
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 4.8e-111 404.8 258 77.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 4.8e-111 404.8 259 78.8
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 6.3e-111 404.4 306 69.6
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 8.2e-111 404.1 267 76.0
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 8.2e-111 404.1 256 79.3
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.1e-110 403.7 267 76.0
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.1e-110 403.7 264 76.1
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.4e-110 403.3 267 76.8
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.8e-110 402.9 259 78.8
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 2.4e-110 402.5 259 78.8
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 2.4e-110 402.5 267 76.4
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 3.1e-110 402.1 267 75.7
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 3.1e-110 402.1 268 76.1
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 3.1e-110 402.1 259 79.5
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 4.1e-110 401.7 267 75.7
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 7.0e-110 401.0 260 79.2
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 7.0e-110 401.0 260 79.6
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 7.0e-110 401.0 267 75.3
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 7.0e-110 401.0 260 79.6
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 9.1e-110 400.6 259 79.2
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 9.1e-110 400.6 259 77.6
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 9.1e-110 400.6 267 74.5
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.2e-109 400.2 267 74.9
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.6e-109 399.8 259 79.2
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.6e-109 399.8 259 78.0
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 2.0e-109 399.4 267 75.3
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.0e-109 399.4 269 75.5
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.6e-109 399.1 267 74.9
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 2.6e-109 399.1 259 79.5
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 4.5e-109 398.3 258 76.0
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 4.5e-109 398.3 260 79.2
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 4.5e-109 398.3 264 76.9
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 5.9e-109 397.9 260 78.8
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 5.9e-109 397.9 260 78.8
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 5.9e-109 397.9 267 75.7
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 5.9e-109 397.9 257 79.8
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 1.3e-108 396.7 259 78.4
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.3e-108 396.7 267 75.7
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.3e-108 396.7 267 76.4
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.7e-108 396.4 260 78.8
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.7e-108 396.4 267 74.9
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 2.2e-108 396.0 260 78.1
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.2e-108 396.0 257 76.3
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.9e-108 395.6 257 79.0
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 2.9e-108 395.6 267 74.2
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 2.9e-108 395.6 267 76.0
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.9e-108 395.6 259 78.8
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.8e-108 395.2 267 76.4
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 3.8e-108 395.2 267 76.0
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 3.8e-108 395.2 256 76.6
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 6.5e-108 394.4 257 79.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 6.5e-108 394.4 257 79.0
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 8.5e-108 394.0 268 74.6
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.1e-107 393.7 257 78.6
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.9e-107 392.9 257 75.1
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.5e-107 392.5 259 77.6
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 3.2e-107 392.1 268 74.3
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 3.2e-107 392.1 294 69.7
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 3.2e-107 392.1 259 77.2
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 4.2e-107 391.7 257 79.0
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 5.5e-107 391.3 256 78.1
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 5.5e-107 391.3 259 76.8
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.6e-106 389.8 267 73.0
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 2.7e-106 389.0 260 77.7
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.6e-106 388.7 259 76.8
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 6.1e-106 387.9 259 74.5
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 1.0e-105 387.1 257 78.2
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.0e-105 387.1 267 73.0
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-105 387.1 263 75.3
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.0e-105 387.1 267 71.9
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.3e-105 386.0 259 76.1
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.0e-105 385.6 256 75.4
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 5.2e-105 384.8 259 74.1
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 5.2e-105 384.8 264 72.7
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.2e-104 383.6 259 76.8
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 2.0e-104 382.9 267 71.5
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 2.6e-104 382.5 267 71.2
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 7.5e-104 380.9 267 70.4
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.7e-103 379.8 256 77.0
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.7e-103 379.8 256 77.0
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.2e-103 377.5 256 73.8
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 4.5e-101 371.7 269 68.8
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 7.7e-101 370.9 256 73.4
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.7e-100 369.8 260 73.1
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.9e-99 366.3 295 65.8
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 5.5e-99 364.8 269 67.7
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 7.2e-99 364.4 319 61.8
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.6e-98 363.2 269 68.4
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.1e-98 362.8 254 70.1
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.7e-98 361.7 252 73.8
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 2.0e-96 356.3 245 70.6
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 4.8e-95 351.7 244 74.2
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 8.0e-90 334.3 224 75.4
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 2.0e-88 329.7 252 67.5
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.3e-87 327.0 230 68.3
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 2.8e-87 325.9 267 65.9
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 2.4e-86 322.8 161 95.0
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 5.4e-86 321.6 257 61.9
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.6e-85 320.1 245 65.3
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 2.0e-85 319.7 171 86.5
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 5.9e-85 318.2 160 93.8
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 7.8e-85 317.8 162 90.7
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.0e-84 315.1 254 62.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 8.6e-84 314.3 251 62.9
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.1e-83 313.9 271 62.0
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 8.9e-81 304.3 272 60.3
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 7.0e-78 294.7 252 64.3
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 7.0e-78 294.7 272 59.9
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 6.6e-76 288.1 162 87.7
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 9.5e-75 284.3 252 57.1
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 3.1e-73 279.3 254 61.0
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 8.9e-73 277.7 252 55.6
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.2e-64 250.8 289 55.0
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 7.5e-64 248.1 250 51.2
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.9e-62 243.4 135 83.7
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 3.9e-60 235.7 135 82.2
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.3e-59 232.3 123 90.2
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 2.6e-56 223.0 183 65.6
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 4.4e-56 222.2 264 44.3
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 2.4e-49 199.9 121 80.2
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 9.9e-48 194.5 280 45.7
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 2.2e-47 193.4 165 63.6
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 2.1e-45 186.8 100 90.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.4e-41 173.3 87 92.0
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 6.9e-41 171.8 87 95.4
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 2.9e-39 166.4 83 89.2
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 6.4e-39 165.2 84 88.1
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-37 160.2 89 84.3
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.0e-36 157.9 233 37.8
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.3e-36 157.5 83 88.0
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.3e-35 152.5 89 80.9
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.6e-35 151.4 89 79.8
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-33 147.5 75 89.3
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.4e-33 147.5 89 78.7
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 7.6e-32 141.7 71 95.8
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.9e-32 141.4 81 82.7
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.7e-31 140.6 81 82.7
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.9e-30 137.1 161 46.0
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 84.0
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 84.0
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 84.0
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 84.0
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 7.1e-30 135.2 81 79.0
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.6e-29 134.0 75 82.7
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.1e-28 129.0 75 80.0
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 2.5e-27 126.7 81 79.0
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.6e-27 124.8 76 78.9
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-26 124.4 71 81.7
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 4.0e-25 119.4 82 75.6
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 5.7e-19 99.0 104 56.7
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.4e-14 84.3 67 62.7
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 1.1e-11 74.7 109 45.0


User provided reference genes

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